The secondary, tertiary, and quaternary structures of the
Synechocystis Cph1 phytochromewere investigated by absorption and circular dichroism spectroscopy, size exclusion chromatography,and limited proteolysis. The Cph1 protein was coexpressed with a bacterial thioredoxin in
Escherichiacoli, reconstituted in vitro with tetrapyrrole chro
mophores, and purified by chitin affinity chromatography.The resultant Cph1 holoproteins were essentially pure and had the specific absorbance ratio (SAR) of0.8-0.9. Circular dichroism spectroscopy and limited proteolysis showed that the chro
mophore bindinginduced marked conformational changes in the Cph1 protein. The
-helical content increased to 42-44%in the holoproteins from 37% in the apoprotein. However, no significant difference in the secondarystructure was detected between the Pr and Pfr forms. The tertiary structure of the Cph1 apoprotein appearedto be relatively flexible but became
more compact and resistant to tryptic digestion upon chro
mophorebinding. Interestingly, a small chro
mopeptide of about 30 kDa was st
ill predominant even after longertryptic digestion. The N-terminal location of this chro
mopeptide was confirmed by expression in
E. coliand in vitro reconstitution with chro
mophores of the 32.5 kDa N-terminal fragment of the Cph1 protein.This chro
mopeptide was fully photoreversible with the spectral characteristic sim
ilar to that of the full-size Cph1 protein. The Cph1 protein forms dimers through the C-terminal region. These results suggestthat the prokaryotic Cph1 phytochrome shares the structural and conformational characteristics of plantphytochromes, such as the two-domain structure consisting of the relatively compact N-terminal and therelatively flexible C-terminal regions, in addition to the chro
mophore-induced conformational changes.