A novel in-
gel endo
glycosidase technique to study oli
gosaccharides with
graphitized carbon LC-MS has revealed differences in the sulfation profile between thelinka
ge and repeat re
gions of chondroitin sulfate ona
ggrecan. Bovine articular cartila
ge a
ggrecan was isolatedin a composite a
garose PAGE
gel or diluted in ammoniumacetate buffer and was di
gested overni
ght with chondroitinase ABC. Includin
g a chemical release/reduction protocol after di
gestion, we could separate and detect threedifferentially sulfated chondroitin sulfate disaccharides ofthe repeat re
gion (
ges/
gifchars/Delta.
gif" BORDER=0 >UA1-3GalNAc0/4/6S-ol) from thethree differentially sulfated linka
ge re
gion hexasaccharides (
ges/
gifchars/Delta.
gif" BORDER=0 >UA1-3GalNAc0/4/6S
ges/
gifchars/beta2.
gif" BORDER=0 ALIGN="middle">1-4GlcA
ges/
gifchars/beta2.
gif" BORDER=0 ALIGN="middle">1-3Gal
ges/
gifchars/beta2.
gif" BORDER=0 ALIGN="middle">1-3Gal
ges/
gifchars/beta2.
gif" BORDER=0 ALIGN="middle">1-4Xylitol). Graphitized carbon LC-MS in the ne
gative ionmode was able to resolve isomeric disaccharides andlinka
ge re
gion hexasaccharides. Specific MS
2 and MS
3enabled us to confirm the sulfate location on all oli
gosaccharides by comparin
g their fra
gmentation with sulfateddisaccharide standards. The presence of unsulfated,6-sulfated, and 4-sulfated linka
ge re
gions was correlatedwith positive Western blot stainin
g with the respective CSlinka
ge re
gion neoepitope antibodies (1B5, 3B3, 2B6)on di
gested a
ggrecan. Our strate
gy of examinin
g linka
gere
gion and repeat re
gion profiles is applicable to screenin
gGAGs from various biolo
gical samples in order to detectdifferences between normal and disease states.