Through design, synthesis, and biological testing o
f constrainedgonadotropin releasing hormone (GnRH)antagonists, we are studying the structural requirements
for biologicalactivity. Here we describe the con
formationalanalysis in solution o
f a highly potent, dicyclic GnRH antagonist,dicyclo(4-10/5,5'-8)[Ac-
D-2Nal
1,
D-pClPhe
2,
D-3Pal
3,Asp
4,Glu
5(Gly),
D-Arg
6,Dbu
8,Dpr
10]GnRH(
1), using NMR spectroscopy. The dicyclic part o
f thismoleculeadopts a pre
ferred con
formation containing a type II
fchars/beta2.gi
f" BORDER=0 ALIGN="middle"> turn aroundresidues 5-6, nested with a type I'
fchars/beta2.gi
f" BORDER=0 ALIGN="middle"> turn aroundresidues 6-7, and a type II
fchars/beta2.gi
f" BORDER=0 ALIGN="middle">-turn-like structure involving residue9 and the side chain o
f residue 10, which isstabilized by hydrogen bonds between Leu
7NH/Asp
4 CO, Dbu
8NH
fchars/delta.gif" BORDER=0 >/Glu
5 CO, and Dpr
10NH
fchars/gamma.gif" BORDER=0 >/Dbu
8 CO. This isa novel con
formation that had not been observed previously in anyconstrained GnRH antagonist and is remarkablydi
fferent
from that
found
for another dicyclic (4-10/5-8) GnRHantagonist with very similar sequence, dicyclo(4-10/5-8)[Ac-
D-2Nal
1,
D-pClPhe
2,
D-Trp
3,Asp
4,Glu
5,
D-Arg
6,Lys
8,Dpr
10]GnRH(
2) (Bienstock et al.
J. Med. Chem.1993,
36, 3265-3273). The con
formation o
f 2contains a type II'
fchars/beta2.gi
f" BORDER=0 ALIGN="middle"> turn around residues 6-7, which had beenproposedto be essential
for GnRH activity. These results are important
forour general understanding o
f polypeptidecon
formation, since they show that the dicyclo(4-10/5-8) backbonecan adopt more than one
family o
f con
formationsdespite its dicyclic nature, and
from the point o
f view o
f the designo
f GnRH antagonists, since they suggest that thepresence o
f a turn around residues 6-7, rather than the type o
f fchars/beta2.gi
f" BORDER=0 ALIGN="middle">turn, may be necessary
for biological activity.