Real-Time Protein Crystallization Image Acquisition and Classification System

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• 作者：Madhav Sigdel ; Marc L. Pusey ; Ramazan S. Aygun
• 刊名：Crystal Growth & Design
• 出版年：2013
• 出版时间：July 3, 2013
• 年：2013
• 卷：13
• 期：7
• 页码：2728-2736
• 全文大小：470K
• 年卷期：v.13,no.7(July 3, 2013)
• ISSN：1528-7505

文摘

In this paper, we describe the design and implementation of a stand-alone real-time system for protein crystallization image acquisition and classification with a goal to assist crystallographers in scoring crystallization trials. An in-house assembled fluorescence microscopy system is built for image acquisition. The images are classified into three categories as noncrystals, likely leads, and crystals. Image classification consists of two main steps 鈥?image feature extraction and application of classification based on multilayer perceptron (MLP) neural networks. Our feature extraction involves applying multiple thresholding techniques, identifying high intensity regions (blobs), and generating intensity and blob features to obtain a 45-dimensional feature vector per image. To reduce the risk of missing crystals, we introduce a max-class ensemble classifier which applies multiple classifiers and chooses the highest score (or class). We performed our experiments on 2250 images consisting of 67% noncrystal, 18% likely leads, and 15% clear crystal images and tested our results using 10-fold cross validation. Our results demonstrate that the method is very efficient (<3 s to process and classify an image) and has comparatively high accuracy. Our system only misses 1.2% of the crystals (classified as noncrystals) most likely due to low illumination or out of focus image capture and has an overall accuracy of 88%.