The P
r to P
fr transition of recombinant
Synechocystis PCC 6803 phytochrome Cph1 and itsN-terminal sensor domain Cph1
2 is accompanied by net acidification in unbuffered solution. The extentof this net photoreversible proton release was measured with a conventional pH electrode and increasedfrom less than 0.1 proton released per P
fr formed at pH 9 to between 0.6 (Cph1) and 1.1 (Cph1
2) H
+/P
frat pH 6. The kinetics of the proton release were monitored at pH 7 and pH 8 using flash-induced transientabsorption measurements with the pH indicator dye fluorescein. Proton release occurs with time constantsof ~4 and ~20 ms that were also observed in parallel measurements of the photocycle (
3 and
4). Thenumber of transiently released protons per P
fr formed is about one. This H
+ release phase is followed bya proton uptake phase of a smaller amplitude that has a time constant of ~270 ms (
5) and is synchronouswith the formation of P
fr. The acidification observed in the P
r to P
fr transition with pH electrodes is thenet effect of these two sequential protonation changes. Flash-induced transient absorption measurementswere carried out with Cph1 and Cph1
2 at pH 7 and pH 8. Global analysis indicated the presence of fivekinetic components (
1-
5: 5 and 300
s and 3, 30, and 300 ms). Whereas the time constants wereapproximately pH independent, the corresponding amplitude spectra (B
1, B
3, and B
5) showed significantpH dependence. Measurements of the P
r/P
fr photoequilibrium indicated that it is pH independent in therange of 6.5-9.0. Analysis of the pH dependence of the absorption spectra from 6.5 to 9.0 suggested thatthe phycocyanobilin chromophore deprotonates at alkaline pH in both P
r and P
fr with an approximate p
Kaof 9.5. The protonation state of the chromophore at neutral pH is therefore the same in both P
r and P
fr.The light-induced deprotonation and reprotonation of Cph1 at neutral pH are thus due to p
Ka changes inthe protein moiety, which are linked to conformational transitions occurring around 4 and 270 ms afterphotoexcitation. These transient structural changes may be relevant for signal transduction by thiscyanobacterial phytochrome.