One hundred new universal exonic markers for birds developed from a genomic pipeline

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• 作者：Kevin C. R. Kerr (1) (2)
  Alison Cloutier (1) (3)
  Allan J. Baker (1) (3)
  
• 关键词：Primers ; Exons ; Protein ; coding ; Phylogenetics ; Genomics
• 刊名：Journal of Ornithology
• 出版年：2014
• 出版时间：April 2014
• 年：2014
• 卷：155
• 期：2
• 页码：561-569
• 全文大小：404 KB
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• 作者单位：Kevin C. R. Kerr (1) (2)
  Alison Cloutier (1) (3)
  Allan J. Baker (1) (3)
  
  1. Department of Natural History, Royal Ontario Museum, 100 Queen鈥檚 Park, Toronto, ON, M5S 2C6, Canada
  2. Toronto Zoo, 361A Old Finch Avenue, Toronto, ON, M1B 5K7, Canada
  3. Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, M5S 3B2, Canada
  
• ISSN：2193-7206

文摘

The functional constraint imposed on exonic sequences increases marker universality and improves sequence alignment accuracy, yet introns have been favoured recently in Avian Tree of Life studies because of the increased sequence coverage that would be required to yield similar resolving power with exons. In this study, we address this shortcoming by developing a pipeline to identify a large number of exonic markers from five avian genomes. Markers were targeted to maximize phylogenetic informativeness and to exclude multi-copy genes. We demonstrate the universality of these markers by testing a portion of them on a taxonomically diverse assemblage of avian specimens.