Genetic data on endangered twaite shad (Clupeidae) assessed in landlocked and anadromous populations: one or more species?

详细信息    查看全文

• 作者：Stefania Chiesa (1) (2)
  Armando Piccinini (3)
  Livia Lucentini (4)
  Laura Filonzi (1)
  Francesco Nonnis Marzano (1)
  
• 关键词：Twaite shad ; Cytochrome b ; Conservation ; Speciation ; Molecular differentiation
• 刊名：Reviews in Fish Biology and Fisheries
• 出版年：2014
• 出版时间：June 2014
• 年：2014
• 卷：24
• 期：2
• 页码：659-670
• 全文大小：
• 参考文献：1. Alexandrino PJ, Ferrand N, Rocha J (1996) Genetic polymorphism of a hemoglobin chain and adenosine deaminase in European shads: evidence for the existence of two distinct genetic entities with natural hybridization. J Fish Biol 48:447鈥?56 CrossRef
  2. Alexandrino P, Faria R, Linhares D, Castro F, Le Corre M, Sabati猫 R, Baglini猫re JL, Weiss S (2006) Interspecific differentiation and intraspecific substructure in two closely related clupeids with extensive hybridization, / Alosa alosa and / Alosa fallax. J Fish Biol 69:242鈥?59 CrossRef
  3. Andree KB, Angel Lop茅z M, Alexandrino P, Faria R, Gisbert E (2011) A preliminary genetic analysis of a recently rediscovered population of the Twaite shad ( / Alosa fallax) in the Ebro river, Spain (Western Mediterranean). J Appl Ichthyol 27:21鈥?3 CrossRef
  4. Aprahamian MW, Baglini猫re JL, Sabati茅 R, Alexandrino P, Aprahamian CD (2002) / Alosa alosa and Alosa fallax spp. Environment Agency, Bristol
  5. Baglini猫re JL (2000) Le genere Alosa sp. In: Baglini猫re JL, Elie P (eds) Les aloses / Alosa alosa et / Alosa fallax spp. INRA-Cemagref, Paris, pp 1鈥?0
  6. Bentzen P, Leggett WC, Brown GG (1993) Genetic relationships among the shads ( / Alosa) revealed by mitochondrial DNA analysis. J Fish Biol 43:909鈥?17 CrossRef
  7. Berti R, Paglianti A, Gherardi F, Gandolfi G, Tagliavini J (2006) Caratterizzazione di alose con marcatori molecolari. Biol Amb 20:253鈥?57
  8. Bianco P (2002) The status of the twaite shad, / Alosa agone, in Italy and the Western Balkans. Mar Ecol 23:51鈥?4 CrossRef
  9. Boisneau P, Mennesson-Boisneau C, Guyomard R (1992) Electrophoretic identity between allis shad / Alosa alosa L. and twaite shad, / Alosa / fallax (Lac茅p猫de). J Fish Biol 40:731鈥?38 CrossRef
  10. Clement M, Posada D, Crandall K (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9:1657鈥?660 CrossRef
  11. Coscia I, Rountree V, King JJ, Roche WK, Mariani S (2010) A highly permeable species boundary between two anadromous fishes. J Fish Biol 77:1137鈥?149 CrossRef
  12. Faria R, Wallner B, Weiss S, Alexandrino P (2004) Isolation and characterization of eight di nucleotide microsatellite loci from two closely related clupeid species ( / Alosa alosa and / A. fallax). Mol Ecol Notes 4:586鈥?88 CrossRef
  13. Faria R, Weiss S, Alexandrino P (2006) Molecular phylogenetic perspective on the evolutionary history of / Alosa spp. (Clupeidae). Mol Phylogenet Evol 40:298鈥?04 CrossRef
  14. Faria R, Pinheiro A, Gabaldon T, Weiss S, Alexandrino P (2011) Molecular tools for species discrimination and detection of hybridization between two closely related Clupeid fishes / Alosa alosa and / A. fallax. J Appl Ichthyol 27:16鈥?0 CrossRef
  15. Faria R, Weiss S, Alexandrino P (2012) Comparative phylogeography and demographic history of European shads ( / Alosa alosa and / A. fallax) inferred from mitochondrial DNA. BMC Evol Biol 12:194鈥?14 CrossRef
  16. Fraser DJ, Bernatchez L (2001) Adaptive evolutionary conservation: towards a unified concept for defining conservation units. Mol Ecol 10:2741鈥?752 CrossRef
  17. Freyhof J, Kottelat M (2008) / Alosa / fallax. In: IUCN 2011. IUCN red list of threatened species. Version 2011.2. http://www.iucnredlist.org. Accessed 1 Nov 2013
  18. Freyhof J, Kottelat M (2010) / Alosa alosa. In: IUCN 2011. IUCN red list of threatened species. Version 2011.2. http://www.iucnredlist.org. Accessed 1 Nov 2013
  19. Gandolfi G, Zerunian S, Torricelli P, Marconato E (1991) I pesci delle acque interne italiane. Ministero dell鈥橝mbiente-Servizio Conservazione Natura, Unione Zoologica Italiana e Istituto Poligrafico e Zecca dello Stato, Roma
  20. Gascuel O (1997) BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14:685鈥?95 CrossRef
  21. Jolly MT, Maitland PS, Genner MJ (2011) Genetic monitoring of two decades of hybridization between allis shad ( / Alosa alosa) and twaite shad ( / Alosa fallax). Conserv Genet 12:1087鈥?100 CrossRef
  22. Moritz C (2002) Strategies to protect biological diversity and the evolutionary processes that sustain it. Syst Biol 51:238鈥?54 CrossRef
  23. Jolly MT, Aprahamian MW, Hawkins SJ, Henderson PA, Hillman R, O鈥橫aoil茅idigh N, Maitland PS, Piper R, Genner MJ (2012) Population genetic structure of protected allis shad ( / Alosa alosa) and twaite shad ( / Alosa fallax). Mar Biol 159:675鈥?87 CrossRef
  24. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic Press, New York, pp 21鈥?32 CrossRef
  25. Kottelat M, Freyhof J (2007) Handbook of European freshwater fishes. Kottelat, Cornol
  26. Le Corre M, Alexandrino P, Sabatie MR, Aprahamian MW, Bagliniere JL (2005) Genetic characterisation of the Rhodanian twaite shad, / Alosa fallax rhodanensis. Fish Manag Ecol 12:275鈥?82 CrossRef
  27. Lochet A, Boutry S, Rochard E (2009) Estuarine phase during seaward migration for allis shad / Alosa alosa and twaite shad / Alosa fallax future spawners. Ecol Freshw Fish 18:323鈥?35 CrossRef
  28. Maruyama T, Fuerst PA (1985) Population bottlenecks and nonequilibrium models in population genetics III. Genic homozygosity in populations which experience periodic bottlenecks. Genetics 111(3):691鈥?03
  29. Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York
  30. Rondinini C, Battistoni A, Peronace V, Teofili C (2013) Lista Rossa IUCN dei Vertebrati Italiani. pp 53, Comitato Italiano IUCN e Ministero dell鈥橝mbiente e della Tutela del Territorio e del Mare, Rome
  31. Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406鈥?25
  32. Salviani I (1554) I Pesci. In Aquatilium animalium historiae. Edizioni Colombo Ristampe. Rome
  33. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731鈥?739 CrossRef
  34. Tajima F, Nei M (1984) Estimation of evolutionary distance between nucleotide sequences. Mol Biol Evol 1:269鈥?85
  35. Tajima F (1989) Statistical methods to test for nucleotide mutation hypothesis by DNA polymorphism. Genetics 123:585鈥?95
  36. Taverny C, Belaud A, Elie P, Sabati茅 MR (2000) Influence des activit茅s humaines. In: Les aloses / Alosa alosa et / Alosa fallax spp. J. L. Baglini猫re and P. Elie (eds). Inra-Cemagref, Paris, France, pp 227鈥?48
  37. Volk J, Bekkevold D, Loeschcke V (2007) Weak population differentiation in northern European populations of the endangered anadromous clupeid / Alosa fallax. J Fish Biol 7:461鈥?69 CrossRef
  38. Whitehead PJP (1984) Clupeidae. In: Whitehead PJP, Bauchot ML, Hureau JC, Nielsen J, Tortonese E (eds) Fishes of north-eastern Atlantic and the Mediterranean, vol I. UNESCO, Paris
  39. Whitehead PJP (1985) FAO species catalogue, vol. 7. Clupeid fishes of the world (Suborder Clupeiodei). An annotated and illustrated catalogue of the herrings, sardines, pilchards, sprats, shads, anchovies, and wolf-herrings. Part I. FAO Fisheries Synopsis 125:1鈥?03
  40. Zerunian S (2002) Condannati all鈥檈stinzione? Biodiversit脿, biologia, minacce e strategie di conservazione dei Pesci d鈥檃cqua dolce indigeni in Italia鈥? Edagricole, Bologna (Italy). (in Italian)
  
• 作者单位：Stefania Chiesa (1) (2)
  Armando Piccinini (3)
  Livia Lucentini (4)
  Laura Filonzi (1)
  Francesco Nonnis Marzano (1)
  
  1. Department of Life Sciences, University of Parma, Parco Area delle Scienze 11a, 43124, Parma, Italy
  2. Department of Biology and CESAM, University of Aveiro, Aveiro, Portugal
  3. Academic Spin Off Gen-Tech 鈥淚nnovative Technologies for Animal Biology鈥? Parma, Italy
  4. Department of Chemistry, Biology and Biotechnologies, University of Perugia, Perugia, Italy
  
• ISSN：1573-5184

文摘

Seven Italian populations of twaite shad Alosa fallax from Northern and Central Italy were investigated to assess genetic diversity by Cytochrome b (Cytb) gene sequencing. The two ecotypes historically referred to landlocked and anadromous populations were investigated for the first time from a genetic point of view, to clarify their phylogenetic relationships. Moreover, results obtained from populations coming from separated Adriatic and Tyrrhenian basins were compared with data assessed in samples of allis shad Alosa alosa from the Atlantic basin. All the Italian samples were recognized at species level as A. fallax, differing for five mutations from A. alosa. The analyses confirmed the occurrence of a single phylogenetic lineage and of a single species within Italian waters, in both landlocked and migratory populations. The minimum spanning network identified six haplotypes for A. fallax and two haplotypes for A. alosa. The neighbour-joining tree and the maximum likelihood on the Cytb gene sequences confirmed two distinct lineages for A. alosa and A. fallax, without evidence of a separation at specific level within the A. fallax group. A weak separation due to incipient population differentiation was detected between anadromous and landlocked Italian populations, supporting the idea of a recent separation. The molecular data herein collected do not support the existence of the already controversial incipient species Alosa agone. Despite this, the two ecotypes could be considered as different management units from a conservation viewpoint.