Novel begomoviruses recovered from Pavonia sp. in Brazil

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• 作者：Vitor Batista Pinto ; João Paulo Silva ; Elvira Fiallo-Olivé…
• 刊名：Archives of Virology
• 出版年：2016
• 出版时间：March 2016
• 年：2016
• 卷：161
• 期：3
• 页码：735-739
• 全文大小：512 KB
• 参考文献：1.Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JC, Fiallo-Olive E, Briddon RW, Hernandez-Zepeda C, Idris A, Malathi VG, Martin DP, Rivera-Bustamante R, Ueda S, Varsani A (2015) Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619CrossRef PubMed
  2.Jones DR (2003) Plant viruses transmitted by whiteflies. Eur J Plant Pathol 109:195–219CrossRef
  3.Navas-Castillo J, Fiallo-Olivé E, Sánchez-Campos S (2011) Emerging virus diseases transmitted by whiteflies. Annu Rev Phytopath 49:219–248CrossRef
  4.Marquez-Martin B, Aragon-Caballero L, Fiallo-Olive E, Navas-Castillo J, Moriones E (2011) Tomato leaf deformation virus, a novel begomovirus associated with a severe disease of tomato in Peru. Eur J Plant Pathol 129:1–7CrossRef
  5.Melgarejo TA, Kon T, Rojas MR, Paz-Carrasco L, Zerbini FM, Gilbertson RL (2013) Characterization of a new world monopartite begomovirus causing leaf curl disease of tomato in Ecuador and Peru reveals a new direction in geminivirus evolution. J Virol 87:5397–5413PubMedCentral CrossRef PubMed
  6.Rojas MR, Hagen C, Lucas WJ, Gilbertson RL (2005) Exploiting chinks in the plant’s armor: evolution and emergence of geminiviruses. Annu Rev Phytopathol 43:361–394CrossRef PubMed
  7.Brustolini OJ, Machado JP, Condori-Apfata JA, Coco D, Deguchi M, Loriato VA, Pereira WA, Alfenas-Zerbini P, Zerbini FM, Inoue-Nagata AK, Santos AA, Chory J, Silva FF, Fontes EP (2015) Sustained NIK-mediated antiviral signalling confers broad-spectrum tolerance to begomoviruses in cultivated plants. Plant Biotechnol J. doi:10.​1111/​pbi.​12349 PubMed
  8.Costa AS (1955) Studies on Abutilon mosaic in Brazil. J Phytopathol 24:97–112
  9.Frischmuth T, Engel M, Lauster S, Jeske H (1997) Nucleotide sequence evidence for the occurrence of three distinct whitefly-transmitted, Sida-infecting bipartite geminiviruses in Central America. J Gen Virol 78:2675–2682CrossRef PubMed
  10.Hofer P, Engel M, Jeske H, Frischmuth T (1997) Nucleotide sequence of a new bipartite geminivirus isolated from the common weed Sida rhombifolia in Costa Rica. Virology 78:1785–1790
  11.Roye ME, McLaughlin WA, Nakhla MK, Maxwell DP (1997) Genetic diversity among geminiviruses associated with the weed species Sida spp., Macroptilium lathyroides, and Wissadula amplissima from Jamaica. Plant Dis 81:1251–1258CrossRef
  12.Echemendía AL, Ramos PL, Díaz L, Peral R, Fuentes A, Pujol M, González G (2004) First report of Sida golden yellow vein virus infecting Sida species in Cuba. Plant Pathol 53:234CrossRef
  13.Jovel J, Reski G, Rothenstein D, Ringel M, Frischmuth T, Jeske H (2004) Sida micrantha mosaic is associated with a complex infection of begomoviruses different from Abutilon mosaic virus. Arch Virol 149:829–841CrossRef PubMed
  14.Fiallo-Olivé E, Martinez-Zubiaur Y, Moriones E, Navas-Castillo J (2010) Complete nucleotide sequence of Sida golden mosaic Florida virus and phylogenetic relationships with other begomoviruses infecting malvaceous weeds in the Caribbean. Arch Virol 155:1535–1537CrossRef PubMed
  15.Fiallo-Olive E, Navas-Castillo J, Moriones E, Martinez-Zubiaur Y (2012) Begomoviruses infecting weeds in Cuba: Increased host range and a novel virus infecting Sida rhombifolia. Arch Virol 157:141–146CrossRef PubMed
  16.Tavares SS, Ramos-Sobrinho R, Gonzalez-Aguilera J, Lima GSA, Assunção IP, Zerbini FM (2012) Further molecular characterization of weed-associated begomoviruses in Brazil with an emphasis on Sida spp. Planta Dan 30:305–315CrossRef
  17.Fryxell PA (1999) Pavonia Cavanilles (Malvaceae). Flora Neotropica Monograph 76
  18.Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small amounts of fresh leaf tissue. Phytochem Bull 19:11–15
  19.Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage phi 29 DNA polymerase. J Virol Methods 116:209–211CrossRef PubMed
  20.Muhire BM, Varsani A, Martin DP (2014) SDT: A virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:e108277PubMedCentral CrossRef PubMed
  21.Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729PubMedCentral CrossRef PubMed
  22.Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574CrossRef PubMed
  23.Nylander JAA (2004) MrModeltest v2. Program distributed by the author Evolutionary Biology Centre, Uppsala University
  24.Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol 1:vev003CrossRef
  25.Orlando A, Silberschmidt K (1946) Studies on the natural dissemination of the virus of “infectious chlorosis” of the Malvaceae and its relation with the insect vector Bemisia tabaci Genn. Arq Inst Biol 17:1–36
  26.Castillo-Urquiza GP, Beserra JEA Jr, Bruckner FP, Lima ATM, Varsani A, Alfenas-Zerbini P, Zerbini FM (2008) Six novel begomoviruses infecting tomato and associated weeds in Southeastern Brazil. Arch Virol 153:1985–1989CrossRef PubMed
  27.Wyant PS, Gotthardt D, Schafer B, Krenz B, Jeske H (2011) The genomes of four novel begomoviruses and a new Sida micrantha mosaic virus strain from Bolivian weeds. Arch Virol 156:347–352CrossRef PubMed
  28.Kon T, Rojas MR, Abdourhamane IK, Gilbertson RL (2009) Roles and interactions of begomoviruses and satellite DNAs associated with okra leaf curl disease in Mali, West Africa. J Gen Virol 90:1001–1013CrossRef PubMed
  29.Sattar MN, Kvarnheden A, Saeed M, Briddon RW (2013) Cotton leaf curl disease—an emerging threat to cotton production worldwide. J Gen Virol 94:695–710CrossRef PubMed
  
• 作者单位：Vitor Batista Pinto (1) (2)
  João Paulo Silva (1) (2)
  Elvira Fiallo-Olivé (1) (2) (3)
  Jésus Navas-Castillo (1) (2) (3)
  Francisco Murilo Zerbini (1) (2)
  
  1. Departamento de Fitopatologia/BIOAGRO, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brazil
  2. National Institute for Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brazil
  3. Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora”, Universidad de Málaga, Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), 29750, Algarrobo-Costa, Málaga, Spain
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Biomedicine
  Virology
  Medical Microbiology
  Infectious Diseases
  
• 出版者：Springer Wien
• ISSN：1432-8798

文摘

Begomoviruses are whitefly-transmitted, single-stranded DNA viruses that cause serious infections in crop plants and are often also associated with non-cultivated plants. Here, we report the detection of two new begomoviruses in Pavonia sp. (Malvaceae). Sequence comparisons and phylogenetic analysis showed that these novel viruses are related to New World begomoviruses. The nucleotide sequences of the DNA-A of both viruses had the highest similarity to abutilon mosaic Bolivia virus (AbMBoV). Based on symptoms observed in the field and considering the host, we propose the names pavonia mosaic virus (PavMV) and pavonia yellow mosaic virus (PavYMV) for these two new begomoviruses.