Identification and expression analysis of APETALA1 homologues in poplar

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• 作者：Zhong Chen (1)
  Xiong Yang (1)
  Xiaoxing Su (2)
  Pian Rao (1)
  Kai Gao (1)
  Bingqi Lei (1)
  Xinmin An (1)
  
  1. National Engineering Laboratory for Tree Breeding ; Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of the Ministry of Education ; College of Biological Sciences and Biotechnology ; Beijing Forestry University ; P. O. Box 118 ; No. 35 Qinghua East Road ; Haidian District ; Beijing ; 100083 ; China
  2. Beijing Center for Physical and Chemical Analysis ; Beijing ; 100094 ; China
  
• 关键词：APETALA1 homologue ; Gene structure ; Phylogeny ; Expression ; Poplar
• 刊名：Acta Physiologiae Plantarum
• 出版年：2015
• 出版时间：March 2015
• 年：2015
• 卷：37
• 期：3
• 全文大小：2,647 KB
• 参考文献：1. Abe M et al (2005) FD, a bZIP protein mediating signals from the floral pathway integrator / FT at the shoot apex. Science 309:1052鈥?056 CrossRef
  2. An XM, Wang DM, Wang ZL, Wang JC, Cao GL, Bo WH, Zhang ZY (2010) Expression profile of / PtLFY in floral bud development associated with floral bud morphological differentiation in / Populus tomentosa. Sci Silvae Sin 46:32鈥?8
  3. An XM, Wang DM, Wang ZL, Li B, Bo WH, Cao GL, Zhang ZY (2011a) Isolation of a / LEAFY homolog from / Populus tomentosa: expression of / PtLFY in / P. tomentosa floral buds and / PtLFY-IR-mediated gene silencing in tobacco ( / Nicotiana tabacum). Plant Cell Rep 30:89鈥?00 CrossRef
  4. An X, Ye M, Wang D, Wang Z, Cao G, Zheng H, Zhang Z (2011b) Ectopic expression of a poplar / APETALA3-like gene in tobacco causes early flowering and fast growth. Biotechnol Lett 33:1239鈥?247 CrossRef
  5. Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8:242 CrossRef
  6. Azeez A, Miskolczi P, Tylewicz S, Bhalerao RP (2014) A tree ortholog of / APETALA1 mediates photoperiodic control of seasonal growth. Curr Biol 24:717鈥?24 CrossRef
  7. Berbel A, Navarro C, Ferrandiz C, Canas LA, Madueno F, Beltran JP (2001) Analysis of / PEAM4, the pea / AP1 functional homologue, supports a model for / AP1-like genes controlling both floral meristem and floral organ identity in different plant species. Plant J 25:441鈥?51 CrossRef
  8. B枚hlenius H, Huang T, Charbonnel-Campaa L, Brunner AM, Jansson S, Strauss SH, Nilsson O (2006) / CO/ / FT regulatory module controls timing of flowering and seasonal growth cessation in trees. Science 312:1040鈥?043 CrossRef
  9. Bradley D, Ratcliffe O, Vincent C, Carpenter R, Coen E (1997) Inflorescence commitment and architecture in / Arabidopsis. Science 275:80鈥?3 CrossRef
  10. Calonje M, Cubas P, Martinez-Zapater JM, Carmona MJ (2004) Floral meristem identity genes are expressed during tendril development in grapevine. Plant Physiol 135:1491鈥?501 CrossRef
  11. Chen Z et al (2013) A Novel Moderate Constitutive Promoter Derived from Poplar ( / Populus tomentosa Carriere). Int J Mol Sci 14:6187鈥?204 CrossRef
  12. Chi Y, Huang F, Liu H, Yang S, Yu D (2011) An / APETALA1-like gene of soybean regulates flowering time and specifies floral organs. J Plant Physiol 168:2251鈥?259 CrossRef
  13. Corbesier L et al (2007) FT protein movement contributes to long-distance signaling in floral induction of / Arabidopsis. Science 316:1030鈥?033 CrossRef
  14. Davies B, Egea-Cortines M, de Andrade Silva E, Saedler H, Sommer H (1996) Multiple interactions amongst floral homeotic MADS box proteins. EMBO J 15:4330鈥?343
  15. Egea-Cortines M, Saedler H, Sommer H (1999) Ternary complex formation between the MADS-box proteins SQUAMOSA, DEFICIENS and GLOBOSA is involved in the control of floral architecture in / Antirrhinum majus. EMBO J 18:5370鈥?379 CrossRef
  16. Elo A, Lemmetyinen J, Turunen ML, Tikka L, Sopanen T (2001) Three MADS-box genes similar to / APETALA1 and / FRUITFULL from silver birch ( / Betula pendula). Physiol Plantarum 112:95鈥?03 CrossRef
  17. Fernando DD, Zhang S (2006) Constitutive expression of the / SAP1 gene from willow ( / Salix discolor) causes early flowering in / Arabidopsis thaliana. Dev Genes Evol 216:19鈥?8 CrossRef
  18. Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A (2003) ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res 31:3784鈥?788 CrossRef
  19. Goodstein DM et al (2012) Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res 40:D1178鈥揇1186 CrossRef
  20. Hsu CY, Liu Y, Luthe DS, Yuceer C (2006) Poplar / FT2 shortens the juvenile phase and promotes seasonal flowering. Plant Cell 18:1846鈥?861 CrossRef
  21. Hsu CY et al (2011) / FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar. Proc Natl Acad Sci USA 108:10756鈥?0761 CrossRef
  22. Hsu CY et al (2012) Overexpression of / CONSTANS homologs / CO1 and / CO2 fails to alter normal reproductive onset and fall bud set in woody perennial poplar. PLoS One 7:e45448 CrossRef
  23. Ingvarsson PK (2005) Nucleotide polymorphism and linkage disequilibrium within and among natural populations of European aspen ( / Populus tremula L., Salicaceae). Genetics 169:945鈥?53 CrossRef
  24. Jang S, An K, Lee S, An G (2002) Characterization of tobacco MADS-box genes involved in floral initiation. Plant Cell Physiol 43:230鈥?38 CrossRef
  25. Kagale S, Links MG, Rozwadowski K (2010) Genome-wide analysis of ethylene-responsive element binding factor-associated amphiphilic repression motif-containing transcriptional regulators in / Arabidopsis. Plant Physiol 152:1109鈥?134 CrossRef
  26. Kaufmann K et al (2010) Orchestration of floral initiation by / APETALA1. Science 328:85鈥?9 CrossRef
  27. Kim S et al (2005) Expression of floral MADS-box genes in basal angiosperms: implications for the evolution of floral regulators. Plant J 43:724鈥?44 CrossRef
  28. Kotoda N, Wada M, Komori S, S-i Kidou, Abe K, Masuda T, Soejima J (2000) Expression pattern of homologues of floral meristem identity genes / LFY and / AP1 during flower development in apple. J Am Soc Hortic Sci 125:398鈥?03
  29. Kotoda N et al (2010) Molecular characterization of / FLOWERING LOCUS T-like genes of apple ( / Malus聽脳聽 / domestica Borkh.). Plant Cell Physiol 51:561鈥?75 CrossRef
  30. Leseberg CH, Li A, Kang H, Duvall M, Mao L (2006) Genome-wide analysis of the MADS-box gene family in / Populus trichocarpa. Gene 378:84鈥?4 CrossRef
  31. Litt A, Irish VF (2003) Duplication and diversification in the / APETALA1/ / FRUITFULL floral homeotic gene lineage: implications for the evolution of floral development. Genetics 165:821鈥?33
  32. Liu C, Xi W, Shen L, Tan C, Yu H (2009) Regulation of floral patterning by flowering time genes. Dev Cell 16:711鈥?22 CrossRef
  33. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2^{鈭捨斘擟t} method. Methods 25:402鈥?08 CrossRef
  34. Mandel MA, Gustafson-Brown C, Savidge B, Yanofsky MF (1992) Molecular characterization of the / Arabidopsis floral homeotic gene / APETALA1. Nature 360:273鈥?77 CrossRef
  35. Mimida N et al (2011) Expression patterns of several floral genes during flower initiation in the apical buds of apple ( / Malus聽脳聽 / domestica Borkh.) revealed by in situ hybridization. Plant Cell Rep 30:1485鈥?492 CrossRef
  36. Mohamed R et al (2010) Populus / CEN/ / TFL1 regulates first onset of flowering, axillary meristem identity and dormancy release in / Populus. Plant J 62:674鈥?88 CrossRef
  37. Nishikawa F, Endo T, Shimada T, Fujii H, Shimizu T, Omura M, Ikoma Y (2007) Increased / CiFT abundance in the stem correlates with floral induction by low temperature in Satsuma mandarin ( / Citrus unshiu Marc.). J Exp Bot 58:3915鈥?927 CrossRef
  38. Nishikawa F, Endo T, Shimada T, Fujii H, Shimizu T, Omura M (2009) Differences in seasonal expression of flowering genes between deciduous trifoliate orange and evergreen Satsuma mandarin. Tree Physiol 29:921鈥?26 CrossRef
  39. Nishikawa F, Iwasaki M, Fukamachi H, Nonaka K, Imai A, Endo T (2011) Seasonal changes of citrus / Flowering Locus T gene expression in kumquat. Bull Natl Inst Fruit Tree Sci 12:27鈥?2
  40. Parcy F, Bomblies K, Weigel D (2002) Interaction of / LEAFY, / AGAMOUS and / TERMINAL FLOWER1 in maintaining floral meristem identity in / Arabidopsis. Development 129:2519鈥?527
  41. Pillitteri LJ, Lovatt CJ, Walling LL (2004) Isolation and Characterization of / LEAFY and / APETALA1 Homologues from / Citrus sinensis L. Osbeck 鈥榃ashington鈥? J Am Soc Hortic Sci 129:846鈥?56
  42. Ratcliffe OJ, Amaya I, Vincent CA, Rothstein S, Carpenter R, Coen ES, Bradley DJ (1998) A common mechanism controls the life cycle and architecture of plants. Development 125:1609鈥?615
  43. Ratcliffe OJ, Bradley DJ, Coen ES (1999) Separation of shoot and floral identity in / Arabidopsis. Development 126:1109鈥?120
  44. Riechmann JL, Krizek BA, Meyerowitz EM (1996) Dimerization specificity of / Arabidopsis MADS domain homeotic proteins / APETALA1, / APETALA3, / PISTILLATA, and / AGAMOUS. Proc Natl Acad Sci USA 93:4793鈥?798 CrossRef
  45. Shchennikova AV, Shulga OA, Immink R, Skryabin KG, Angenent GC (2004) Identification and characterization of four chrysanthemum MADS-box genes, belonging to the / APETALA1/ / FRUITFULL and / SEPALLATA3 subfamilies. Plant Physiol 134:1632鈥?641 CrossRef
  46. Shen L, Chen Y, Su X, Zhang S, Pan H, Huang M (2012) Two / FT orthologs from / Populus simonii Carri猫re induce early flowering in / Arabidopsis and poplar trees. Plant Cell Tiss Organ Cult 108:371鈥?79 CrossRef
  47. Strauss SH, Rottmann WH, Brunner AM, Sheppard LA (1995) Genetic engineering of reproductive sterility in forest trees. Mol Breed 1:5鈥?6 CrossRef
  48. Strauss SH, Brunner AM, Busov VB, Ma C, Meilan R (2004) Ten lessons from 15聽years of transgenic / Populus research. Forestry 77:455鈥?65 CrossRef
  49. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731鈥?739 CrossRef
  50. Tuskan GA et al (2006) The genome of black cottonwood, / Populus trichocarpa (Torr. & Gray). Science 313:1596鈥?604 CrossRef
  51. Wagner D, Sablowski RW, Meyerowitz EM (1999) Transcriptional activation of / APETALA1 by / LEAFY. Science 285:582鈥?84 CrossRef
  52. Wang J, Zhang X, Yan G, Zhou Y, Zhang K (2013) Over-expression of the / PaAP1 gene from sweet cherry ( / Prunus avium L.) causes early flowering in / Arabidopsis thaliana. J Plant Physiol 170:315鈥?20 CrossRef
  53. Weigel D, Meyerowitz EM (1994) The ABCs of floral homeotic genes. Cell 78:203鈥?09 CrossRef
  54. Wellmer F, Riechmann JL (2010) Gene networks controlling the initiation of flower development. Trends Genet 26:519鈥?27 CrossRef
  55. Wullschleger SD, Weston DJ, DiFazio SP, Tuskan GA (2012) Revisiting the sequencing of the first tree genome: / Populus trichocarpa. Tree Physiol 33:357鈥?64 CrossRef
  56. Zhang L, Xu Y, Ma R (2008) Molecular cloning, identification, and chromosomal localization of two MADS box genes in peach ( / Prunus persica). J Genet Genomics 35:365鈥?72 CrossRef
  57. Zhang HL et al (2010) Precocious flowering in trees: the / FLOWERING LOCUS T gene as a research and breeding tool in / Populus. J Exp Bot 61:2549鈥?560 CrossRef
  
• 刊物主题：Plant Physiology; Plant Genetics & Genomics; Plant Biochemistry; Plant Pathology; Plant Anatomy/Development; Agriculture;
• 出版者：Springer Berlin Heidelberg
• ISSN：1861-1664

文摘

APETALA1 plays a crucial role in floral transition from vegetative to reproductive phase and in flower development. In this study, a comprehensive analysis of AP1 homologues in poplar was performed by describing the gene structure and chromosomal location. The phylogenetic relationship of the deduced amino acid sequences of Arabidopsis AP1 and AP1 homologues from Populus, to other AP1-like proteins was analyzed. The expression of PtAP1-1 and PtAP1-2 in Populus tomentosa was examined by RT-qPCR. Expression profiles were similar and both genes exhibited a high expression level in the reproductive phase. Seasonal expression profiles in floral buds indicated that the pattern of PtAP1-1 and PtAP1-2 expression in male and female floral buds was different. The trends of the PtAP1-1 and PtAP1-2 transcript levels in both sex floral buds were similar, but the peak of expression of the two genes in male buds was earlier than in female buds. This work would be of value to future functional analysis of AP1 homologues in poplar.