Molecular evolution and functional divergence of X-intrinsic protein genes in plants

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• 作者：Jelli Venkatesh (1)
  Jae-Woong Yu (1)
  Daniel Gaston (2)
  Se Won Park (1)
  
  1. Department of Molecular Biotechnology ; Konkuk University ; 1 ; Hwayang-dong ; Gwangjin-gu ; Seoul ; Republic of Korea
  2. Department of Pathology ; Dalhousie University ; Halifax ; NS ; Canada
  
• 关键词：Aquaporin ; Homologues ; Divergence ; Major intrinsic proteins ; Phylogenetics ; Selection pressure ; X ; intrinsic protein
• 刊名：Molecular Genetics and Genomics
• 出版年：2015
• 出版时间：April 2015
• 年：2015
• 卷：290
• 期：2
• 页码：443-460
• 全文大小：6,941 KB
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• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Cell Biology
  Biochemistry
  Microbial Genetics and Genomics
  
• 出版者：Springer Berlin / Heidelberg
• ISSN：1617-4623

文摘

X-intrinsic proteins (XIPs) are a novel class of major intrinsic proteins found in diverse organisms. Recently, XIP genes have been reported to be involved in the transport of a wide range of hydrophobic solutes; however, the evolutionary forces driving their structural and functional divergence in plants are poorly understood. In the present study, comprehensive bioinformatics analyses were performed to gain insight into the molecular and evolutionary mechanisms driving this structural and functional diversification. Phylogenetic analyses have revealed the major lineage-specific expansions of XIP genes in plants. Within the eudicots, XIP genes have diverged into Asterid and Rosid-specific phylogenetic lineages and have also undergone several independent duplications during the course of evolution. Investigation of functional divergence at the protein level showed evidence for shifting evolutionary rate and/or altered constraints on the physiochemical properties of specific amino acid sites following gene duplication. Selection pressure analyses suggest that purifying selection is the predominant evolutionary force acting on the XIP gene subfamily, along with episodic positive selection. However, only a few amino acid sites were found to be subjected to such episodic positive selection. Furthermore, protein functional divergence analysis has identified critical amino acid residues, which must be validated by future experimental studies, that could provide new insights into the role of XIPs in transport of a wide range solutes of physiological importance.