Atomic force microscopy fishing of GP120 on immobilized aptamers and its mass spectrometry identification

详细信息    查看全文

• 作者：N. S. Bukharina (1)
  Yu. D. Ivanov (1)
  T. O. Pleshakova (1)
  P. A. Frantsuzov (1)
  E. Yu. Andreeva (1)
  A. L. Kaysheva (1)
  A. A. Izotov (1)
  T. I. Pavlova (1)
  V. S. Ziborov (1)
  S. P. Radko (1)
  A. I. Archakov (1)
  
• 关键词：gp120 HIV ; 1 ; aptamer ; atomic force microscopy ; fishing ; mass spectrometry
• 刊名：Biochemistry (Moscow) Supplemental Series B: Biomedical Chemistry
• 出版年：2014
• 出版时间：April 2014
• 年：2014
• 卷：8
• 期：2
• 页码：115-124
• 全文大小：
• 参考文献：1. Archakov, A.I., Ivanov, Y.D., Lisitsa, A.V., and Zgoda, V.G., / Proteomics, 2009, vol. 9, pp. 1326鈥?343. ternal" href="http://dx.doi.org/10.1002/pmic.200800598" target="_blank" title="It opens in new window">CrossRef
  2. Chang, T.W., / J. Immunol. Methods, 1983, vol. 65, pp. 217鈥?23. ternal" href="http://dx.doi.org/10.1016/0022-1759(83)90318-6" target="_blank" title="It opens in new window">CrossRef
  3. Haab, B.B., Dunham, M.J., and Brown, P.O., / Genome Biol., 2001, vol. 2, RESEARCH0004.1-4.13.
  4. Tuerk, C. and Gold, L., / Science, 1990, vol. 249, pp. 505鈥?10. ternal" href="http://dx.doi.org/10.1126/science.2200121" target="_blank" title="It opens in new window">CrossRef
  5. Rakhmetova, S.Yu., Radko, S.P., Gnedenko, O.V., Bodoev, N.V., Ivanov, A.S., and Archakov, A.I., / Biomed. Khim., 2010, vol. 56, pp. 72鈥?1.
  6. Yoshida, Y., Waga, I., and Horii, K., / Proteomics Clin. Appl., 2012, vol. 6, pp. 574鈥?80. ternal" href="http://dx.doi.org/10.1002/prca.201200037" target="_blank" title="It opens in new window">CrossRef
  7. Wang, W., Chen, Ch., Qian, M., and Zhao, X.Sh., / Anal. Biochem., 2008, vol. 373, pp. 213鈥?19. ternal" href="http://dx.doi.org/10.1016/j.ab.2007.11.013" target="_blank" title="It opens in new window">CrossRef
  8. Zeng, X., Zhang, X., Yang, W., Jia, H., and Li, Y., / Anal. Biochem., 2012, vol. 424, pp. 8鈥?1. ternal" href="http://dx.doi.org/10.1016/j.ab.2012.01.021" target="_blank" title="It opens in new window">CrossRef
  9. Huang, D.W., Niu, Ch.G., Qin, P.Z., Ruan, M., and Zeng, G.M., / Talanta, 2010, vol. 83, pp. 185鈥?89. ternal" href="http://dx.doi.org/10.1016/j.talanta.2010.09.004" target="_blank" title="It opens in new window">CrossRef
  10. Queir贸s, R.B., de-los-Santos-脕lvarez, N., Noronha, J.P., and Sales, M.G.F., / Sensors and Actuators B: Chemical, 2013, vol. 181, pp. 766鈥?72. ternal" href="http://dx.doi.org/10.1016/j.snb.2013.01.062" target="_blank" title="It opens in new window">CrossRef
  11. Wu, Z.Sh., Zheng, F., Shen, G.L., and Yu, R.Q., / Biomaterials, 2009, vol. 30, pp. 2950鈥?955. ternal" href="http://dx.doi.org/10.1016/j.biomaterials.2009.02.017" target="_blank" title="It opens in new window">CrossRef
  12. Kim, D.K., Kerman, K., Hiep, H.M., Saito, M., Yamamura, Sh., Takamura, Y., Kwon, Y.S., and Tamiya, E., / Anal. Biochem., 2008, vol. 379, pp. 1鈥?. ternal" href="http://dx.doi.org/10.1016/j.ab.2008.04.029" target="_blank" title="It opens in new window">CrossRef
  13. Archakov, A.I., Ivanov, Y.D., Lisitsa, A.V., and Zgoda, V.G., / Proteomics, 2007, vol. 7, pp. 4鈥?. ternal" href="http://dx.doi.org/10.1002/pmic.200600467" target="_blank" title="It opens in new window">CrossRef
  14. Archakov, A.I. and Ivanov, Yu.D., / Mol. Biosyst., 2007, vol. 3, pp. 336鈥?42. ternal" href="http://dx.doi.org/10.1039/b618285b" target="_blank" title="It opens in new window">CrossRef
  15. Barbas, C.F., Bj枚rling, E., Chiodi, F., Dunlop, N., Cababa, D., Jones, T.M., Zebedee, S.L., Persson, M.A., Nara, P.L., and Norrby, E., / Proc. Natl. Acad. Sci. USA, 1992, vol. 89, pp. 9339鈥?343. ternal" href="http://dx.doi.org/10.1073/pnas.89.19.9339" target="_blank" title="It opens in new window">CrossRef
  16. Smith, D., Collins, B.D., Heil, J., and Koch, T.H., / Mol. Cell Proteomics, 2003, vol. 2, pp. 11鈥?8. ternal" href="http://dx.doi.org/10.1074/mcp.M200059-MCP200" target="_blank" title="It opens in new window">CrossRef
  17. Yamada, K., Yoshii, S., Kumagai, S., Fujiwara, I., Nishio, K., Okuda, M., Matsukawa, N., and Yamashita, I., / Jpn. J. Appl. Phys., 2006, vol. 45, pp. 4259鈥?264. ternal" href="http://dx.doi.org/10.1143/JJAP.45.4259" target="_blank" title="It opens in new window">CrossRef
  18. Ivanov, Yu.D., Danichev, V.V., Pleshakova, T.O., Shumov, I.D., Ziborov, V.S., Krokhin, N.V., Zagumenniy, M.N., Ustinov, V.S., Smirnov, L.P., Shironin, A.V., and Archakov, A.I., / Biochemistry (Moscow) Suppl. Ser. B: Biomed. Chem., 2013, vol. 7, pp. 46鈥?1. ternal" href="http://dx.doi.org/10.1134/S1990750813010071" target="_blank" title="It opens in new window">CrossRef
  19. Kada, G., Kienberger, F., and Hinterdorfer, P., / Nanotoday, 2008, vol. 3, pp. 12鈥?9. ternal" href="http://dx.doi.org/10.1016/S1748-0132(08)70011-2" target="_blank" title="It opens in new window">CrossRef
  20. Stroh, C., Wang, H., Bash, R., Ashcroft, B., Nelson, J., Gruber, H., Lohr, D., Lindsay, S.M., and Hinterdorfer, P., / Proc. Natl. Acad. Sci. USA, 2004, vol. 101, pp. 12503鈥?2507. ternal" href="http://dx.doi.org/10.1073/pnas.0403538101" target="_blank" title="It opens in new window">CrossRef
  21. Thomson, N., / J. Microscopy, 2005, vol. 217, pp. 193鈥?99. ternal" href="http://dx.doi.org/10.1111/j.1365-2818.2005.01399.x" target="_blank" title="It opens in new window">CrossRef
  22. M眉ller, D. J. and Engel, A., / Nat. Protoc., 2007, vol. 2, pp. 2191鈥?197. ternal" href="http://dx.doi.org/10.1038/nprot.2007.309" target="_blank" title="It opens in new window">CrossRef
  23. Ivanov, Yu., Frantsuzov, P., Ivanov, A., Bykov, V., Besedin, S., Hui Bon Hoa, G., and Archakov, A., / Anal. Methods, 2010, vol. 2, pp. 688鈥?93. ternal" href="http://dx.doi.org/10.1039/b9ay00274j" target="_blank" title="It opens in new window">CrossRef
  24. Ivanov, Yu.D., Bukharina, N.S., Frantsuzov, P.A., Pleshakova, T.O., Kanashenko, S.L., Medvedeva, N.V., Argentova, V.V., Zgoda, V.G., Munro, A.W., and Archakov, A.I., / Soft Matter, 2012, vol. 8, pp. 4602鈥?608. ternal" href="http://dx.doi.org/10.1039/c2sm07333a" target="_blank" title="It opens in new window">CrossRef
  25. Kaysheva, A.L., Ivanov, Yu.D., Zgoda, V.G., Frantsuzov, P.A., Pleshakova, T.O., Krokhin, N.V., Ziborov, V.S., and Archakov, A.I., / Biochemistry (Moscow) Suppl. Ser. B: Biomed. Chem., 2010, vol. 4, pp. 16鈥?5.
  26. ttp://www.agilent.com/" class="a-plus-plus">www.agilent.com/
  27. Ivanov, Yu.D., Frantsuzov, P.A., Pleshakova, T.O., Ziborov, V.S., Svetlov, S.K., Krohin, N.V., Konev, V.A., Kovalev, O.B., Uchaikin, V.F., Yastrebova, O.N., Sveshnikov, P.G., and Archakov, A.I., / Biochemistry (Moscow) Suppl. Ser. B: Biomed. Chem., 2010, vol. 4, pp. 117鈥?22. ternal" href="http://dx.doi.org/10.1134/S1990750810020010" target="_blank" title="It opens in new window">CrossRef
  28. Ivanov, Yu.D., Bukharina, N.S., Frantsuzov, P.A., Pleshakova, T.O., Krohin, N.V., Kanashenko, S.L., and Archakov, A.I., / Biochemistry (Moscow) Suppl. Ser. B: Biomed. Chem., 2012, vol. 6, pp. 218鈥?24. ternal" href="http://dx.doi.org/10.1134/S1990750812030067" target="_blank" title="It opens in new window">CrossRef
  29. Ivanov, Yu.D., Pleshakova, T.O., Kozlov, A.F., Malsagova, K.A., Krohin, N.V., Shumyantseva, V.V., Shumov, I.D., Popov, V.P., Naumova, O.V., Fomin, B.I., Nasimov, D.脌., Aseev, A.L., and Archakov, A.I., / Lab on a Chip, 2012, vol. 12, pp. 5104鈥?111. ternal" href="http://dx.doi.org/10.1039/c2lc40555e" target="_blank" title="It opens in new window">CrossRef
  
• 作者单位：N. S. Bukharina (1)
  Yu. D. Ivanov (1)
  T. O. Pleshakova (1)
  P. A. Frantsuzov (1)
  E. Yu. Andreeva (1)
  A. L. Kaysheva (1)
  A. A. Izotov (1)
  T. I. Pavlova (1)
  V. S. Ziborov (1)
  S. P. Radko (1)
  A. I. Archakov (1)
  
  1. Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences, ul. Pogodinskaya 10, Moscow, 119121, Russia
  
• ISSN：1990-7516

文摘

A method of atomic force microscopy-based fishing (AFM fishing) has been developed for protein detection in the analyte solution using a chip with an immobilized aptamer. This method is based on the biospecific fishing of a target protein from a bulk solution onto the small AFM chip area with the immobilized aptamer to this protein used as the molecular probe. Such aptamer-based approach allows to increase an AFM image contrast compared to the antibody-based approach. Mass spectrometry analysis used after the biospecific fishing to identify the target protein on the AFM chip has proved complex formation. Use of the AFM chip with the immobilized aptamer avoids interference of the antibody and target protein peaks in a mass spectrum.