Backbone and side chain chemical shift assignments of apolipophorin III from Galleria mellonella
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  • 作者:Karin A. Crowhurst ; James V.C. Horn ; Paul M.M. Weers
  • 关键词:Apolipophorin III ; Exchangeable apolipoprotein ; apoLp ; III ; Galleria mellonella ; NMR ; Chemical shift assignment
  • 刊名:Biomolecular NMR Assignments
  • 出版年:2016
  • 出版时间:April 2016
  • 年:2016
  • 卷:10
  • 期:1
  • 页码:143-147
  • 全文大小:570 KB
  • 参考文献:Archer SJ, Ikura M, Torchia DA, Bax A (1991) An alternative 3D NMR technique for correlating backbone 15N with side chain Hβ resonances in larger proteins. J Magn Reson 95:636–641ADS
    Breiter DR, Kanost MR, Benning MM, Wesenberg G, Law JH, Wells MA, Rayment I, Holden HM (1991) Molecular structure of an apolipoprotein determined at 2.5-A resolution. Biochemistry 30:603–608CrossRef
    Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPIPE: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277–293CrossRef
    Fan D, Zheng Y, Yang D, Wang J (2003) NMR solution structure and dynamics of an exchangeable apolipoprotein, Locusta migratoria apolipophorin III. J Biol Chem 278:21212–21220. doi:10.​1074/​jbc.​M208486200 CrossRef
    Gotz P, Weise C, Kopacek P, Losen S, Wiesner A (1997) Isolated apolipophorin III from Galleria mellonella stimulates the immune reactions of this insect. J Insect Physiol 43:383–391CrossRef
    Grzesiek S, Bax A (1993) Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins. J Biomol NMR 3:185–204
    Johnson BA (2004) Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol Biol 278:313–352. doi:10.​1385/​1-59259-809-9:​313
    Johnson BA (2013) NMRViewJ, v. 9.0. One Moon Scientific Inc, Newark
    Narayanaswami V, Kiss RS, Weers PM (2010) The helix bundle: a reversible lipid binding motif. Comp Biochem Physiol A Mol Integr Physiol 155:123–133. doi:10.​1016/​j.​cbpa.​2009.​09.​009 CrossRef
    Niere M, Meisslitzer C, Dettloff M, Weise C, Ziegler M, Wiesner A (1999) Insect immune activation by recombinant Galleria mellonella apolipophorin III(1). Biochim Biophys Acta 1433:16–26CrossRef
    Oztug M, Martinon D, Weers PM (2012) Characterization of the apoLp-III/LPS complex: insight into the mode of binding interaction. Biochemistry 51:6220–6227. doi:10.​1021/​bi300619a CrossRef
    Panchal SC, Bhavesh NS, Hosur RV (2001) Improved 3D triple resonance experiments, HNN and HN(C)N, for HN and 15N sequential correlations in (13C, 15N) labeled proteins: application to unfolded proteins. J Biomol NMR 20:135–147CrossRef
    Shen Y, Delaglio F, Cornilescu G, Bax A (2009) TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J Biomol NMR 44:213–223. doi:10.​1007/​s10858-009-9333-z CrossRef
    UniProt C (2015) UniProt: a hub for protein information. Nucleic Acids Res 43:D204–D212. doi:10.​1093/​nar/​gku989 CrossRef
    Van der Horst DJ, Rodenburg KW (2010) Locust flight activity as a model for hormonal regulation of lipid mobilization and transport. J Insect Physiol 56:844–853. doi:10.​1016/​j.​jinsphys.​2010.​02.​015 CrossRef
    Wang J, Sykes BD, Ryan RO (2002) Structural basis for the conformational adaptability of apolipophorin III, a helix-bundle exchangeable apolipoprotein. Proc Natl Acad Sci USA 99:1188–1193. doi:10.​1073/​pnas.​032565999 ADS CrossRef
    Weers PM, Ryan RO (2006) Apolipophorin III: role model apolipoprotein. Insect Biochem Mol Biol 36:231–240. doi:10.​1016/​j.​ibmb.​2006.​01.​001 CrossRef
    Weise C, Franke P, Kopacek P, Wiesner A (1998) Primary structure of apolipophorin-III from the greater wax moth, Galleria mellonella. J Protein Chem 17:633–641CrossRef
    Zdybicka-Barabas A, Cytryńska M (2013) Apolipophorins and insects immune response. Inv Surv J 10:58–68
    Zdybicka-Barabas A, Staczek S, Mak P, Skrzypiec K, Mendyk E, Cytryńska M (2013) Synergistic action of Galleria mellonella apolipophorin III and lysozyme against Gram-negative bacteria. Biochim Biophys Acta 1828:1449–1456. doi:10.​1016/​j.​bbamem.​2013.​02.​004 CrossRef
    Zhang O, Kay LE, Olivier JP, Forman-Kay JD (1994) Backbone 1H and 15N resonance assignments of the N-terminal SH3 domain of drk in folded and unfolded states using enhanced-sensitivity pulsed field gradient NMR techniques. J Biomol NMR 4:845–858CrossRef
  • 作者单位:Karin A. Crowhurst (1)
    James V.C. Horn (2)
    Paul M.M. Weers (2)

    1. Department of Chemistry and Biochemistry, California State University Northridge, 18111 Nordhoff St., Northridge, CA, 91330-8262, USA
    2. Department of Chemistry and Biochemistry, California State University Long Beach, 1250 Bellflower Blvd., Long Beach, CA, 90840-9507, USA
  • 刊物类别:Physics and Astronomy
  • 刊物主题:None Assigned
  • 出版者:Springer Netherlands
  • ISSN:1874-270X
文摘
Apolipophorin III, a 163 residue monomeric protein from the greater wax moth Galleria mellonella (abbreviated as apoLp-IIIGM), has roles in upregulating expression of antimicrobial proteins as well as binding and deforming bacterial membranes. Due to its similarity to vertebrate apolipoproteins there is interest in performing atomic resolution analysis of apoLp-IIIGM as part of an effort to better understand its mechanism of action in innate immunity. In the first step towards structural characterization of apoLp-IIIGM, 99 % of backbone and 88 % of side chain 1H, 13C and 15N chemical shifts were assigned. TALOS+ analysis of the backbone resonances has predicted that the protein is composed of five long helices, which is consistent with the reported structures of apolipophorins from other insect species. The next stage in the characterization of apoLp-III from G. mellonella will be to utilize these resonance assignments in solving the solution structure of this protein.

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