Mapping QTL for resistance to botrytis grey mould in chickpea

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• 作者：Chetukuri Anuradha (12)
  Pooran M. Gaur (1) p.gaur@cgiar.org
  Suresh Pande (1)
  Kishore K. Gali (13)
  Muthyl Ganesh (2)
  Jagdish Kumar (14)
  Rajeev K. Varshney (15)
• 关键词：Botrytis grey mould &#8211 ; Chickpea &#8211 ; Cicer arietinum L. &#8211 ; Linkage map &#8211 ; QTL mapping &#8211 ; Disease resistance
• 刊名：Euphytica
• 出版年：2011
• 出版时间：November 2011
• 年：2011
• 卷：182
• 期：1
• 页码：1-9
• 全文大小：1.7 MB
• 参考文献：1. Bakr M, Rahman MM, Ahmed F, Kumar J (1993) Progress in management of botrytis gray mold of chickpea in Bangladesh. In: Haware MP, Gowda CLL, McDonald D (eds) Recent advances in research in botrytis gray mold of chickpea. ICRISAT, Patancheru, AP, India, pp 17–19
  2. Bakr MA, Hussain SA, Afzal MA, Rahman MA (2002) Chickpea status and production constraints in Bangladesh. In: Bakr MA, Siddique KHM, Johansen C (eds.), Integrated management of botrytis grey mould of chickpea in Bangladesh and Australia, Summary Proceedings of a Project Inception Workshop, Bangladesh Agricultural Research Institute, Joydebpur, Gazipur, Bangladesh, pp 19–32
  3. Buhariwalla HK, Eshwar K, Jayashree B, Crouch JH (2005) Development of ESTs from chickpea roots and their use in diversity analysis of the Cicer genus. BMC Plant Biol 16:1–14
  4. Burgess DR, Bretag T, Keane PJ (1997) Seed-to-seedling transmission of Botrytis cinerea in chickpea and disinfestations of seed with moist heat. Aust J Exp Agric 37:223–229
  5. Carranza JM (1965) Wilt of chickpea (Cicer arietinum L.) caused by B. cinerea (In Spanish). Revista de la Facultad de Agronomia. Universidad Nacional de la Plata 41:135–138
  6. Chandra S, Buhariwalla HK, Kashiwagi J, Harikrishna S, Sridevi R, Krishnamurthy L, Serraj R, Crouch JH (2004) Identifying QTL-linked markers in marker-deficient crops. In: Fischer T et al (eds) New directions for a diverse planet, Proceedings Fourth International Crop Science Congress, Brisbane, Australia. http://www.cropscience.org.au/icsc2004/poster/3/4/1/795_chandras.htm
  7. Chaturvedi R, Singh IS, Gupta AK (1995) Inheritance of resistance to botrytis grey mould in chickpea (Cicer arietinum L.). Legume Res 18:1–4
  8. Cho S, Kumar J, Shultz JL, Anupama K, Tefera F, Muehlbauer FJ (2002) Mapping genes for double podding and other morphological traits in chickpea. Euphytica 128:285–292
  9. Cho S, Chen W, Muehlbauer FJ (2004) Pathotype-specic genetic factors in chickpea (Cicer arietinum L.) for quantitative resistance to Ascochyta blight. Theor Appl Genet 109:733–739
  10. Cobb BD, Clarkson JM (1994) A simple procedure for optimising the polymerase chain reaction (PCR) using modified Taguchi methods. Nucleic Acids Res 22:3801–3805
  11. Cobos MJ, Fern谩ndez MJ, Rubio J, Kharrat M, Moreno MT, Gil J, Mill谩n T (2005) A linkage map in chickpea (Cicer arietinum L.) in two populations from Kabuli 脳 Desi crosses: location of a resistance gene for fusarium wilt race 0. Theor Appl Genet 110:1347–1353
  12. Cobos MJ, Rubio J, Strange RN, Moreno MT, Gil J, Mill谩n T (2006) A new QTL for Ascochyta blight resistance in a RIL population derived from an interspecific cross in chickpea. Euphytica 149:105–111
  13. Collard BCY, Pang ECK, Ades PK, Taylor PWJ (2003) Preliminary investigation of QTLs associated with seedling resistance to Ascochyta blight from Cicer echinospermum, a wild relative of chickpea. Theor Appl Genet 107:719–729
  14. Cother EJ (1977) Isolation of important pathogenic fungi from seeds of Cicer arietinum. Seed Sci Technol 5:593–597
  15. Davidson JA, Pande S, Bretag TW, Lindbeck KD, Kishore GK (2004) Biology and management of Botrytis spp. legume crops. In: Elad Y, Williamson B, Tudzynski P, Delen N (eds) Botrytis: biology, pathology and control. Kluwer Academic Publishers, The Netherlands, pp 295–318
  16. Dhar V, Rathi YPS, Tripathi HS, Pal M, Singh G, Haware MP, Upadhyay JP (1993) Multilocational screening for Botrytis gray mold resistance in India. In: Haware MP, Gowda CLL, McDonald D (eds) Recent advances in research on Botrytis gray mold of chickpea. ICRISAT, Patancheru, AP, India, pp 14–16
  17. Flandez-Galvez, Ford HR, Pang ECK, Taylor PWJ (2003) An Intraspecific linkage map of the chickpea (Cicer arietinum L.) genome based on sequence tagged microsatellite site and resistance gene analog markers. Theor Appl Genet 106:1447–1456
  18. Gaur PM, Slinkard AE (1990a) Inheritance and linkage of isozyme coding genes in chickpea. J Hered 80:455–461
  19. Gaur PM, Slinkard AE (1990b) Genetic control and linkage relations of additional isozyme markers in chickpea. Theor Appl Genet 80:648–656
  20. Gaur PM, Krishnamurthy L, Kashiwagi J (2008) Improving drought avoidance root traits in chickpea (Cicer arietinum L.)—current status of research at ICRISAT. Plant Prod Sci 11:3–11
  21. Grewal JS, Laha SK (1983) Chemical control of botrytis blight in chickpea. Indian Phytopathol 36:516–520
  22. Grewal JS, Pal M, Rewal N (1992) Botrytis gray mold of chickpea in India. In: Haware MP, Faris DG, Gowda CLL (eds) Botrytis gray mold of chickpea. ICRISAT, Patancheru, AP, India, pp 6–8
  23. Halila I, Cobos MJ, Rubio J, Millan T, Kharrat M, Marrakchi M, Gil J (2009) Tagging and mapping a second resistance gene for Fusarium wilt race 0 in chickpea. Eur J Plant Pathol 124:87–92
  24. Haware MP (1998) Diseases of chickpea. In: Allen DJ, Lenne JM (eds) The pathology of food and pasture legumes. CAB International, Wallingford, UK, pp 473–516
  25. Haware MP, McDonald D (1992) Integrated management of botrytis gray mold of chickpea. In: Haware MP, Faris DG, Gowda CLL (eds) Botrytis gray mold of chickpea. ICRISAT, Patancheru, AP, India, pp 3–6
  26. Haware MP, McDonald D (1993) Botrytis gray mold of chickpea. In: Haware MP, Gowda CLL, McDonald D (eds) Recent advances in research on botrytis gray mold of chickpea. ICRISAT, Patancheru, AP, India, pp 3–6
  27. ICRISAT (2007) ICRISAT Archival Report 2007. International Crops Research Institute for the Semi-Arid Tropics, Patancheru 502 324, Andhra Pradesh, India, p 289
  28. Iruela M, Castro P, Rubio J, Cubero J, Jacinto C, Mill谩n T, Gil J (2007) Validation of a QTL for resistance to ascochyta blight linked to resistance to fusarium wilt race 5 in chickpea (Cicer arietinum L.). Eur J Plant Pathol 119:29–37
  29. Jansen RC, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136:1447–1455
  30. Karki PB, Joshi S, Chaudhary G, Chaudhary RN (1993) Studies on botrytis gray mold of chickpea in Nepal. In: Haware MP, Gowda CLL, McDonald D (eds) Recent advances in research on botrytis gray mold of chickpea. ICRISAT, Patancheru, AP, India, pp 11–13
  31. Kazan K, Muehlbauer FJ, Weeden NF, Ladizinsky G (1993) Inheritance and linkage relationships of morphological and isozyme loci in chickpea (Cicer arietinum L.). Theor Appl Genet 86:417–426
  32. Knights EJ, Siddique KHM (2002) Manifestation of Botrytis cinerea on chickpeas in Australia. In: Workshop proceedings integrated management of botrytis grey mould of chickpea in Bangladesh and Australia, Bangladesh Agricultural Research Institute. Joydebpur, Gazipur, Bangladesh, pp 70–77
  33. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12:172–175
  34. Kottapalli P, Gaur PM, Katiyar SK, Crouch JH, Buhariwalla HK, Pande S, Gali KK (2008) Mapping and validation of QTLs for resistance to an Indian isolate of Ascochyta blight pathogen in chickpea. Euphytica 165:79–88
  35. Lichtenzveig J, Scheuring C, Dodge J, Abbo S, Zhang HB (2005) Construction of BAC and BIBAC libraries and their applications for generation of SSR markers for genome analysis of chickpea, Cicer arietinum L. Theor Appl Genet 110:492–510
  36. Mace ES, Buhariwalla HK, Crouch JH (2003) A high-throughput DNA extraction protocol for tropical molecular breeding programs. Plant Mol Biol Rep 21:459a-h
  37. MacLeod W, Sweetingham M (2000) Botrytis grey mould of chickpea. In: Regan K, White P, Siddique KHM (eds), Proceedings of pulse research and industry development in Western Australia, Agriculture Western Australia, Perth, Australia, pp 87–88
  38. Malik BA, Iqbal SM, Bashir M (1993) Present status and future research outlook for botrytis gray mold—a potential threat to chickpea in Pakistan. In: Haware MP, Gowda CLL, McDonald D (eds) Recent advances in research in botrytis gray mold of chickpea. ICRISAT, Patancheru, AP, India, pp 19–20
  39. Mayer MS, Tullu A, Simon CJ, Kumar J, Kaiser WJ, Kraft WJ, Muehlbauer FJ (1997) Development of a DNA marker for fusarium wilt resistance in chickpea. Crop Sci 37:1625–1629
  40. Millan T, Clarke HJ, Siddique KHM, Buhariwalla HK, Gaur PM, Kumar J, Gil J, Kahl G, Winter P (2006) Chickpea molecular breeding: new tools and concepts. Euphytica 147(1–2):81–103
  41. Nayak SN, Zhu H, Varghese N, Choi HK, Datta S, Horres R, J眉ngling R, Singh J, Kavi Kishor PB, Kahl G, Winter P, Cook DR, Varshney RK (2010) Integration of novel SSR and gene-based marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theor Appl Genet doi:10.1007/s00122-010-1265-1
  42. Nene YL, Sheila VK, Sharma SB (1984) A world list of chickpea (Cicer arietinum L.) and Pigeon Pea (Cajanus cajan L. Millsp) pathogens. ICRISAT Pulse Pathology Progress Report 32: pp 19
  43. Pande S, Singh G, Rao JN, Bakr MA, Chaurasia PCP, Joshi S, Johansen C, Singh SD, Kumar J, Rahman MM, Gowda CLL (2002) Integrated management of botrytis gray mold of chickpea. Information Bulletin No. 61. ICRISAT, Andhra Pradesh, India
  44. Pande S, Galloway JJ, Gaur PM, Siddique KHM, Tripathi HS, Taylor P, MacLeod MWJ, Basandrai AK, Bakr A, Joshi, Krishna Kishore G, Isenegger DA, Narayana Rao J, Sharma M (2006) Botrytis grey mould of chickpea: a review of biology, epidemiology, and disease management. Aust J Agric Res 57:1137–1150
  45. Pfaff T, Kahl G (2003) Mapping of gene specific markers on the genetic map of chickpea (Cicer arietinum L.). Mol Gen Genetics 269:243–251
  46. Ratnaparkhe MB, Santra DK, Tullu A, Muehlbauer FJ (1998) Inheritance of inter-simple-sequence-repeat polymorphisms and linkage with a fusarium wilt resistance gene in chickpea. Theor Appl Genet 96:348–353
  47. Rewal S, Grewal JS (1989) Inheritance of resistance to B. Cinerea Pers in Cicer arietinum L. Euphytica 44:61–63
  48. Santra DK, Tekeoglu M, Ratnaparkhe M, Kaiser WJ, Muehlbauer FJ (2000) Identification and mapping of QTLs conferring resistance to Ascochyta Blight in chickpea. Crop Sci 40:1606–1612
  49. Sharma KD, Muehlbauer FJ (2007) Fusarium wilt of chickpea: physiological specialization, genetics of resistance and resistance gene tagging. Euphytica 157(1–2):1–14
  50. Sharma KD, Chenand W, Muehlbauer FJ (2004) A consensus set of differential lines for identifying races of Fusarium oxysporum f.sp. ciceris. Int Chickpea Pigeonpea Newslett 11:34–36
  51. Simon CJ, Muehlbauer FJ (1997) Construction of a chickpea linkage map and it’s comparison with maps of pea and lentil. J Hered 88:115–119
  52. Singh KB, Holly L, Bejiga G (1991) A catalog of kabuli chickpea germplasm. ICARDA, Aleppo, Syria, pp 393–397
  53. FAO Stat (2008) http://faostat.fao.org/. Accessed 14 May 2010
  54. Tar’an B, Warkentin TD, Tullu A, Vandenberg A (2007) Genetic mapping of ascochyta blight resistance in chickpea (Cicer arietinum L.) using a simple sequence repeat linkage map. Genome 50:26–34
  55. Tegelstrom H (1992) Detection of mitochondrial DNA fragments in molecular genetic analysis of populations. In: Hoelzel AR (ed) A practical approach. IRL Press, Oxford, UK, pp 89–114
  56. Tekeoglu M, Santra D, Muehlbauer FJ (2000) Ascochyta blight resistance in three chickpea recombinant inbred line populations. Crop Sci 40:1251–1256
  57. Tekeoglu M, Rajesh PN, Muehlbauer FJ (2002) Integration of sequence tagged microsatellite sites to the chickpea genetic map. Theor Appl Genet 105:847–854
  58. Tiwari SK, Pandey MP, Pandya BP, Chaube HS (1985) Inheritance of resistance to botrytis grey mould in chickpea. Int Chickpea Newsl 12:11–12
  59. Tullu A, Muehlbauer FJ, Simon CJ, Mayer MS, Kumar J, Kaiser WJ, Kraft JM (1998) Inheritance and linkage of a gene for resistance to race 4 of fusarium wilt and RAPD markers in chickpea. Euphytica 102:227–232
  60. Udupa SM, Baum M (2003) Genetic dissection of pathotype specific resistance to ascochyta blight resistance in chickpea (Cicer arietinum L.) using microsatellite markers. Theor Appl Genet 106:196–1202
  61. Utz HF, Melchinger AE (1996) PLABQTL: a program for composite interval mapping of QTL. Journal of Agricultural Genomics 2(1). http://wheat.pw.usda.gov/jag/papers96/paper196/utz.html
  62. Van Ooijen JW, Voorrips RE (2001) Joinmap庐 3.0, Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, The Netherlands, pp 1–49
  63. Williams PC, Singh U (1987) The chickpea—nutritional quality and the evaluation of quality. In: Saxena MC, Singh KB (eds) The chickpea. CAB International, Wallingford, UK, pp 329–356
  64. Winter P, Pfaff T, Udupa SM, Huttel B, Sharma PC, Sahi S, Arreguin-Espinoza R, Weigand P, Muehlbauer FJ, Kahl G (1999) Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinm L.) genome. Mol Gen Genetics 262:90–101
  65. Winter P, Benko Iseppon AM, Huttel B, Ratnaparkhe M, Tullu A, Sonnante G, Pfa VT, Tekeoglu M, Santra D, Rajesh PN, Kahl G, Muehlbauer FJ (2000) A linkage map of the (Cicer arietinum L.) genome based on recombinant inbred lines from a C. arietinum 脳 C. reticulatum cross: localization of resistance genes for fusarium wilt races 4 and 5. Theor Appl Genet 101:1155–1165
  66. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457–1468
• 作者单位：1. International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, 502 324 AP, India2. Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, 500 030 AP, India3. NRC Plant Biotechnology Institute (NRC-PBI), 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada4. Hendrick Beans-for-Health Research Foundation, 11791 Sandy Row, Inkerman, ON K0E 1J0, Canada5. Generation Challenge Program (GCP), c/o CIMMYT, 06600 Mexico, DF, Mexico
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Plant Physiology
  Plant Sciences
  Ecology
  
• 出版者：Springer Netherlands
• ISSN：1573-5060

文摘

Botrytis grey mould (BGM) caused by Botrytis cinerea Pers. ex. Fr. is the second most important foliar disease of chickpea (Cicer arietinum L.) after ascochyta blight. An intraspecific linkage map of chickpea consisting of 144 markers assigned on 11 linkage groups was constructed from recombinant inbred lines (RILs) of a cross that involved a moderately resistant kabuli cultivar ICCV 2 and a highly susceptible desi cultivar JG 62. The length of the map obtained was 442.8 cM with an average interval length of 3.3 cM. Three quantitative trait loci (QTL) which together accounted for 43.6% of the variation for BGM resistance were identified and mapped on two linkage groups. QTL1 explained about 12.8% of the phenotypic variation for BGM resistance and was mapped on LG 6A. It was found tightly linked to markers SA14 and TS71rts36r at a LOD score of 3.7. QTL2 and QTL3 accounted for 9.5 and 48% of the phenotypic variation for BGM resistance, respectively, and were mapped on LG 3. QTL 2 was identified at LOD 2.7 and flanked by markers TA25 and TA144, positioned at 1 cM away from marker TA25. QTL3 was a strong QTL detected at LOD 17.7 and was flanked by TA159 at 12 cM distance on one side and TA118 at 4 cM distance on the other side. This is the first report on mapping of QTL for BGM resistance in chickpea. After proper validation, these QTL will be useful in marker-assisted pyramiding of BGM resistance in chickpea.