Phylogeny of β-xylanases from Planctomycetes
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- 作者：D. G. Naumoff (1)
A. A. Ivanova (1)
S. N. Dedysh (1) - 关键词：Planctomycetes ; Singulisphaera ; Isosphaera ; glycoside hydrolase ; endo ; glycosidase ; β ; xylanase ; GH10 family ; CAZy ; hierarchical protein classification ; protein evolution ; protein phylogenetic tree ; search of homologues
- 刊名：Molecular Biology
- 出版年：2014
- 出版时间：May 2014
- 年：2014
- 卷：48
- 期：3
- 页码：439-447
- 全文大小：
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A. A. Ivanova (1)
S. N. Dedysh (1)
1. Winogradsky Institute of Microbiology, Russian Academy of Sciences, Moscow, 117312, Russia - ISSN：1608-3245
文摘
Here, we present the results of a computational analysis of a group of hypothetical GH10 endo-β-xylanases from the Planctomycetes, a bacterial phylum with poorly characterized functional capabilities. These proteins are encoded in all analyzed genomes of heterotrophic Planctomycetes and form a phylogenetically distinct and tight cluster. In addition, we determined nucleotide sequences for endo-β-xylanase genes from five strains of Isosphaera-Singulisphaera group of the Planctomycetes. The trees constructed for the 16S rRNA genes and the inferred amino acid sequences of endo-β-xylanases were highly congruent, thus suggesting the vertical transfer of endo-β-xylanase genes and their functional importance in Planctomycetes.