Phenotypic and genetic characterization of a family carrying two Xq21.1-21.3 interstitial deletions associated with syndromic hearing loss
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  • 作者:Sandra Iossa (1) (2)
    Valerio Costa (3)
    Virginia Corvino (4)
    Gennaro Auletta (4)
    Luigi Barruffo (4)
    Stefania Cappellani (5)
    Carlo Ceglia (2)
    Giovanni Cennamo (6)
    Adamo Pio D鈥橝damo (5) (7)
    Alessandra D鈥橝mico (8)
    Nilde Di Paolo (8)
    Raimondo Forte (9)
    Paolo Gasparini (5) (7)
    Carla Laria (4)
    Barbara Lombardo (1) (2)
    Rita Malesci (4)
    Andrea Vitale (10)
    Elio Marciano (4)
    Annamaria Franz猫 (2) (4)

    1. DMMBM
    ; Universit脿 di Napoli 鈥淔ederico II鈥? Naples ; Italy
    2. Ceinge Biotecnologie Avanzate
    ; Naples ; Italy
    3. IGB 鈥淎. Buzzati Traverso鈥? CNR
    ; Naples ; Italy
    4. Istituto di Audiologia
    ; Dipartimento di Neuroscienze ; Scienze Riproduttive e Odontostomatologiche ; Universit脿 di Napoli 鈥淔ederico II鈥? Naples ; Italy
    5. Institute for Maternal and Child Health - IRCCS 鈥淏urlo Garofolo鈥? Trieste
    ; Italy
    6. Dipartimento di Oftalmologia
    ; Universit脿 di Napoli 鈥淔ederico II鈥? Naples ; Italy
    7. University of Trieste
    ; Trieste ; Italy
    8. Dipartimento di Scienze Biomediche Avanzate
    ; Universit脿 di Napoli 鈥淔ederico II鈥? Naples ; Italy
    9. Dipartimento di Oftalmologia Pediatrica
    ; Universit脿 di Salerno ; Salerno ; Italy
    10. Dipartimento di Scienze Motorie e del Benessere
    ; Universit脿 di Napoli 鈥淧arthenope鈥? Naples ; Italy
  • 关键词:Choroideremia ; Hypotonia ; Interstitial deletions ; Intellectual disability ; X ; linked hearing impairment
  • 刊名:Molecular Cytogenetics
  • 出版年:2015
  • 出版时间:December 2015
  • 年:2015
  • 卷:8
  • 期:1
  • 全文大小:1,412 KB
  • 参考文献:1. Rehm, HL (2003) Genetics and the Genome Project. Ear Hearing 24: pp. 270-4 CrossRef
    2. Leonard, H, Wen, X (2002) The epidemiology of mental retardation: challenges and opportunities in the new millennium. Ment Retar Dev Disab Res Rev 8: pp. 117-34 CrossRef
    3. Des Portes, V (2013) X-linked mental deficiency. Handb Clin Neurol 111: pp. 297-306 CrossRef
    4. Kleefstra, T, Hamel, BCJ (2005) X-linked mental retardation: further lumping, splitting and emerging phenotypes. Clin Genet 67: pp. 451-67 CrossRef
    5. Ropers, HH, Hamel, BC (2005) X-linked mental retardation. Nat Rev Genet 6: pp. 46-57 CrossRef
    6. Ayazi, S (1981) Choroideremia, obesity, and congenital deafness. Am J Ophthalmol 92: pp. 63-9 CrossRef
    7. Tabor, A, Andersen, O, Lundsteen, C, Niebuhr, E, Sardemann, H (1983) Interstitial deletion in the 鈥渃ritical region鈥?of the long arm of the X chromosome in a mentally retarded boy and his normal mother. Hum Genet 64: pp. 196-9 CrossRef
    8. Rosenberg, T, Schwartz, M, Niebuhr, E, Yang, HM, Sardemann, H, Andersen, O (1986) Choroideremia in interstitial deletion of the X chromosome. Ophthalmic Paediatr Genet 7: pp. 205-10 CrossRef
    9. Kok, YJ, Vossenaar, ER, Cremers, CW, Dahl, N, Laporte, J, Hu, LJ (1996) Identification of a hot spot for microdeletions in patients with X-linked deafness type 3 (DFN3) 900聽kb proximal to the DFN3 gene POU3F4. Hum Mol Genet 5: pp. 1229-35 CrossRef
    10. Hildebrand, MS, Silva, MG, Tan, TY, Rose, E, Nishimura, C, Tolmachova, T (2007) Molecular characterization of a novel X-linked syndrome involving developmental delay and deafness. Am J Med Genet A 143A: pp. 2564-75 CrossRef
    11. Rush, ET, Schaefer, GB (2010) Identification of an X-linked deletion syndrome through comparative genomic hybridization microarray. Semin Pediatr Neurol 17: pp. 51-3 CrossRef
    12. Cremers, FP, Pol, DJ, Diergaarde, PJ, Wieringa, B, Nussbaum, RL, Schwartz, M (1989) Physical fine mapping of the choroideremia locus using Xq21 deletions associated with complex syndromes. Genomics 4: pp. 41-6 CrossRef
    13. Merry, DE, Lesko, JG, Sosnoski, DM, Lewis, RA, Lubinsky, M, Trask, B (1989) Choroideremia and deafness with stapes fixation: a contiguous gene deletion syndrome in Xq21. Am J Hum Genet 45: pp. 530-40
    14. Naranjo, S, Voesenek, K, Calle-Mustienes, E, Robert-Moreno, A, Kokotas, H, Grigoriadou, M (2010) Multiple enhancers located in a 1-Mb region upstream of POU3F4 promote expression during inner ear development and may be required for hearing. Hum Genet 128: pp. 411-9 CrossRef
    15. Anger, GJ, Crocker, S, McKenzie, K, Brown, KK, Morton, CC, Harrison, K (2014) X-linked deafness-2 (DFNX2) phenotype associated with a paracentric inversion upstream of POU3F4. Am J Audiol 23: pp. 1-6 CrossRef
    16. Choi, JW, Min, B, Kim, A, Koo, JW, Kim, CS, Park, WY (2015) De Novo Large Genomic Deletions Involving POU3F4 in Incomplete Partition Type III Inner Ear Anomaly in East Asian Populations and Implications for Genetic Counseling. Otol Neurotol 36: pp. 184-90
    17. Nussbaum, RL, Lesko, JG, Lewis, RA, Ledbetter, SA, Ledbetter, DH (1987) Isolation of anonymous DNA sequences from within a submicroscopic X chromosomal deletion in a patient with choroideremia, deafness, and mental retardation. Proc Natl Acad Sci U S A 84: pp. 6521-5 CrossRef
    18. Rosenberg, T, Niebuhr, E, Yang, HM, Parving, A, Schwartz, M (1987) Choroideremia, congenital deafness and mental retardation in a family with an X chromosomal deletion. Ophthalmic Paediatr Genet 8: pp. 139-43 CrossRef
    19. Schwartz, M, Yang, HM, Niebuhr, E, Rosenberg, T, Page, DC (1988) Regional localization of polymorphic DNA loci on the proximal long arm of the X chromosome using deletions associated with choroideremia. Hum Genet 78: pp. 156-60 CrossRef
    20. Song, MH, Lee, HK, Choi, JY, Kim, S, Bok, J, Kim, UK (2010) Clinical evaluation of DFN3 patients with deletions in the POU3F4 locus and detection of carrier female using MLPA. Clin Genet 78: pp. 524-32 CrossRef
    21. Chinetti, V, Iossa, S, Auletta, G, Corvino, V, Luca, M, Falco, F (2011) Mutational analysis for GJB2, GJB6, and GJB3 genes in Campania within a universal neonatal hearing screening programme. Int J Audiol 50: pp. 866-70 CrossRef
    22. Kok, YJ, Maarel, SM, Bitner-Glindzicz, M, Huber, I, Monaco, AP, Malcolm, S (1995) Association between X-linked mixed deafness and mutations in the POU domain gene POU3F4. Science 267: pp. 685-8 CrossRef
    23. Tarpey, PS, Smith, R, Pleasance, E, Whibley, A, Edkins, S, Hardy, C (2009) A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation. Nat Genet 41: pp. 535-43 CrossRef
    24. Bokhoven, H, Hurk, JA, Bogerd, L, Philippe, C, Gilgenkrantz, S, Jong, P (1994) Cloning and characterization of the human choroideremia gene. Hum Mol Genet 3: pp. 1041-6 CrossRef
    25. Junn, E, Mouradian, MM (2012) MicroRNAs in neurodegenerative diseases and their therapeutic potential. Pharmacol Ther 133: pp. 142-50 CrossRef
    26. Costa, V, Esposito, R, Aprile, M, Ciccodicola, A (2012) Non-coding RNA and pseudogenes in neurodegenerative diseases: 鈥淭he (un)Usual Suspects鈥? Front Genet 3: pp. 231 CrossRef
    27. Poliseno, L, Salmena, L, Zhang, J, Carver, B, Haveman, WJ, Pandolfi, PP (2010) A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature 465: pp. 1033-8 CrossRef
    28. Salmena, L, Poliseno, L, Tay, Y, Kats, L, Pandolfi, PP (2011) A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?. Cell 146: pp. 353-8 CrossRef
    29. Database of Genomic Variants [http://dgv.tcag.ca/dgv/app/home]
    30. Landa, G, Rosen, RB, Garcia, PM, Seiple, WH (2009) Combined three-dimensional spectral OCT/SLO topography and microperimetry: steps toward achieving functional spectral OCT/SLO. Ophthalmic Res 43: pp. 92-8 CrossRef
    31. Forte, R, Cennamo, G, Finelli, ML, Bonavolont脿, P, Greco, GM, Crecchio, G (2012) Retinal Micropseudocysts in Diabetic Retinopathy: Prospective Functional and Anatomic Evaluation. Ophthalmic Res 2: pp. 6-11 CrossRef
    32. Chinetti, V, Iossa, S, Auletta, G, Laria, C, Luca, M, Leva, F (2010) Screening for GJB2 and GJB6 gene mutations in patients from Campania region with sensorineural hearing loss. Int J Audiol 49: pp. 326-31 CrossRef
    33. Castillo, FJ, Rodr铆guez-Ballesteros, M, Alvarez, A, Hutchin, T, Leonardi, E, Oliveira, CA (2005) A novel deletion involving the connexin-30 gene, del(GJB6-d13s1854), found in trans with mutations in the GJB2 gene (connexin-26) in subjects with DFNB1 non-syndromic hearing impairment. J Med Genet 42: pp. 588-94 CrossRef
    34. O鈥機onnell, JR, Weeks, DE (1998) PedCheck: A program for identifying genotype incompatibilities in linkage analysis. Am J Hum Genet 63: pp. 259-66 CrossRef
    35. Abecasis, GR, Cherny, SS, Cookson, WO, Cardon, LR (2002) Merlin鈥搑apid analysis of dense genetic maps using sparse gene flow trees. Nat Genet 30: pp. 97-101 CrossRef
    36. Primer3 software [http://bioinfo.ut.edu/primer3-0.4.0/]
    37. BLAST [http://blast.ncbi.nlm.nih.gov/Blast.cgi]
    38. Genome Browser [http://genome.ucsc.edu/]
    39. Human Protein Atlas database [http://www.proteinatlas.org]
  • 刊物主题:Cytogenetics; Molecular Medicine;
  • 出版者:BioMed Central
  • ISSN:1755-8166
文摘
Background Sensorineural hearing impairment is a common pathological manifestation in patients affected by X-linked intellectual disability. A few cases of interstitial deletions at Xq21 with several different phenotypic characteristics have been described, but to date, a complete molecular characterization of the deletions harboring disease-causing genes is still missing. Thus, the aim of this study is to realize a detailed clinical and molecular analysis of a family affected by syndromic X-linked hearing loss with intellectual disability. Results Clinical analyses revealed a very complex phenotype that included inner ear malformations, vestibular problems, choroideremia and hypotonia with a peculiar pattern of phenotypic variability. Genomic analysis revealed, for the first time, the presence of two close interstitial deletions in the Xq21.1-21.3, harboring 11 protein coding, 9 non-coding genes and 19 pseudogenes. Among these, 3 protein coding genes have already been associated with X-linked hearing loss, intellectual disability and choroideremia. Conclusions In this study we highlighted the presence of peculiar genotypic and phenotypic details in a family affected by syndromic X-linked hearing loss with intellectual disability. We identified two, previously unreported, Xq21.1-21.3 interstitial deletions. The two rearrangements, containing several genes, segregate with the clinical features, suggesting their role in the pathogenicity. However, not all the observed phenotypic features can be clearly associated with the known genes thus, further study is necessary to determine regions involved.

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