A rural worker infected with a bovine-prevalent genotype of Campylobacter fetus subsp. fetus supports zoonotic transmission and inconsistency of MLST and whole-genome typing
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  • 作者:G. Iraola ; L. Betancor ; L. Calleros…
  • 刊名:European Journal of Clinical Microbiology & Infectious Diseases
  • 出版年:2015
  • 出版时间:August 2015
  • 年:2015
  • 卷:34
  • 期:8
  • 页码:1593-1596
  • 全文大小:169 KB
  • 参考文献:1.Linton D, Owen RJ, Stanley J (1996) Rapid identification by PCR of the genus Campylobacter and of five Campylobacter species enteropathogenic for man and animals. Res Microbiol 147:707鈥?18PubMed View Article
    2.Fitzgerald C, Tu ZC, Patrick M, Stiles T, Lawson AJ, Santovenia M, Gilbert MJ, van Bergen M, Joyce K, Pruckler J, Stroika S, Duim B, Miller WG, Loparev V, Sinnige JC, Fields PI, Tauxe RV, Blaser MJ, Wagenaar JA (2014) Campylobacter fetus subsp. testudinum subsp. nov., isolated from humans and reptiles. Int J Syst Evol Microbiol 64:2944鈥?948PubMed View Article
    3.Hum S, Quinn K, Brunner J, On SLW (1997) Evaluation of a PCR assay for identification and differentiation of Campylobacter fetus subspecies. Aust Vet J 75:827鈥?31PubMed View Article
    4.Abril C, Vilei EM, Brodard I, Burnens A, Frey J, Miserez R (2007) Discovery of insertion element ISCfe1: a new tool for Campylobacter fetus subspecies differentiation. Clin Microbiol Infect 13:993鈥?000PubMed View Article
    5.Iraola G, Hern谩ndez M, Calleros L, Paolicchi F, Silveyra S, Velilla A, Carretto L, Rodr铆guez E, P茅rez R (2012) Application of a multiplex PCR assay for Campylobacter fetus detection and subspecies differentiation in uncultured samples of aborted bovine fetuses. J Vet Sci 13:371鈥?76PubMed Central PubMed View Article
    6.Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821鈥?29PubMed Central PubMed View Article
    7.Swain MT, Tsai IJ, Assefa SA, Newbold C, Berriman M, Otto TD (2012) A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs. Nat Protoc 7:1260鈥?284PubMed Central PubMed View Article
    8.Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75PubMed Central PubMed View Article
    9.Wagenaar JA, van Bergen MAP, Blaser MJ, Tauxe RV, Newell DG, van Putten JP (2014) Campylobacter fetus infections in humans: exposure and disease. Clin Infect Dis 58:1579鈥?586PubMed View Article
    10.van Bergen MAP, Dingle KE, Maiden MCJ, Newell DG, van der Graaf-Van Bloois L, van Putten JPM, Wagenaar JA (2005) Clonal nature of Campylobacter fetus as defined by multilocus sequence typing. J Clin Microbiol 43:5888鈥?898PubMed Central PubMed View Article
    11.van der Graaf-van Bloois L, Miller WG, Yee E, Rijnsburger M, Wagenaar JA, Duim B (2014) Inconsistency of phenotypic and genomic characteristics of Campylobacter fetus subspecies requires reevaluation of current diagnostics. J Clin Microbiol 52:4183鈥?188PubMed Central PubMed View Article
    12.Ichiyama S, Hirai S, Minami T, Nishiyama Y, Shimizu S, Shimokata K, Ohta M (1998) Campylobacter fetus subspecies fetus cellulitis associated with bacteremia in debilitated hosts. Clin Infect Dis 27:252鈥?55PubMed View Article
    13.Gazaigne L, Legrand P, Renaud B, Bourra B, Taillandier E, Brun-Buisson C, Lesprit P (2008) Campylobacter fetus bloodstream infection: risk factors and clinical features. Eur J Clin Microbiol Infect Dis 27:185鈥?89PubMed View Article
  • 作者单位:G. Iraola (1) (2)
    L. Betancor (3)
    L. Calleros (2)
    P. Gadea (3)
    G. Algorta (3) (4)
    S. Galeano (5)
    P. Muxi (5)
    G. Greif (6)
    R. P茅rez (2)

    1. Unidad de Bioinform谩tica, Institut Pasteur de Montevideo, Montevideo, 11400, Uruguay
    2. Secci贸n Gen茅tica Evolutiva, Facultad de Ciencias, Universidad de la Rep煤blica, Montevideo, Uruguay
    3. Departamento de Bacteriolog铆a y Virolog铆a, Instituto de Higiene, Facultad de Medicina, Universidad de la Rep煤blica, Montevideo, Uruguay
    4. Laboratorio de Microbiolog铆a, Hospital Brit谩nico, Montevideo, Uruguay
    5. Unidad de Hematolog铆a, Hospital Brit谩nico, Montevideo, Uruguay
    6. Unidad de Biolog铆a Molecular, Institut Pasteur de Montevideo, Montevideo, Uruguay
  • 刊物类别:Biomedical and Life Sciences
  • 刊物主题:Biomedicine
    Medical Microbiology
    Internal Medicine
  • 出版者:Springer Berlin / Heidelberg
  • ISSN:1435-4373
文摘
Whole-genome characterisation in clinical microbiology enables to detect trends in infection dynamics and disease transmission. Here, we report a case of bacteraemia due to Campylobacter fetus subsp. fetus in a rural worker under cancer treatment that was diagnosed with cellulitis; the patient was treated with antibiotics and recovered. The routine typing methods were not able to identify the microorganism causing the infection, so it was further analysed by molecular methods and whole-genome sequencing. The multi-locus sequence typing (MLST) revealed the presence of the bovine-associated ST-4 genotype. Whole-genome comparisons with other C. fetus strains revealed an inconsistent phylogenetic position based on the core genome, discordant with previous ST-4 strains. To the best of our knowledge, this is the first C. fetus subsp. fetus carrying the ST-4 isolated from humans and represents a probable case of zoonotic transmission from cattle.

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