Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5
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- 作者：Marcelo Bertalan (1)
Rodolpho Albano (2)
Vania de Pádua (3)
Luc Rouws (4)
Cristian Rojas (1)
Adriana Hemerly (1) (12)
Kátia Teixeira (4)
Stefan Schwab (4)
Jean Araujo (4)
André Oliveira (4)
Leonardo Fran?a (1)
Viviane Magalh?es (1)
Sylvia Alquéres (1)
Alexander Cardoso (1)
Welington Almeida (1)
Marcio Martins Loureiro (1)
Eduardo Nogueira (11) (3)
Daniela Cidade (2)
Denise Oliveira (2)
Tatiana Sim?o (2)
Jacyara Macedo (2)
Ana Valad?o (2)
Marcela Dreschsel (4)
Flávia Freitas (2)
Marcia Vidal (4)
Helma Guedes (4)
Elisete Rodrigues (4)
Carlos Meneses (4)
Paulo Brioso (5)
Luciana Pozzer (5)
Daniel Figueiredo (5)
Helena Montano (5)
Jadier Junior (5)
Gon?alo de Souza Filho (6)
Victor Martin Quintana Flores (6)
Beatriz Ferreira (6)
Alan Branco (6)
Paula Gonzalez (7)
Heloisa Guillobel (7)
Melissa Lemos (8)
Luiz Seibel (8)
José Macedo (8)
Marcio Alves-Ferreira (9)
Gilberto Sachetto-Martins (9)
Ana Coelho (9)
Eidy Santos (9)
Gilda Amaral (9)
Anna Neves (9)
Ana Beatriz Pacheco (10)
Daniela Carvalho (10)
Letícia Lery (10)
Paulo Bisch (10)
Shaila C R?ssle (10)
Turán ürményi (10)
Alessandra Rael Pereira (2)
Rosane Silva (10)
Edson Rondinelli (10)
Wanda von Krüger (10)
Orlando Martins (1)
José Ivo Baldani (4)
Paulo CG Ferreira (1) (12) - 刊名：BMC Genomics
- 出版年：2009
- 出版时间：December 2009
- 年：2009
- 卷：10
- 期：1
- 全文大小：1123KB
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Rodolpho Albano (2)
Vania de Pádua (3)
Luc Rouws (4)
Cristian Rojas (1)
Adriana Hemerly (1) (12)
Kátia Teixeira (4)
Stefan Schwab (4)
Jean Araujo (4)
André Oliveira (4)
Leonardo Fran?a (1)
Viviane Magalh?es (1)
Sylvia Alquéres (1)
Alexander Cardoso (1)
Welington Almeida (1)
Marcio Martins Loureiro (1)
Eduardo Nogueira (11) (3)
Daniela Cidade (2)
Denise Oliveira (2)
Tatiana Sim?o (2)
Jacyara Macedo (2)
Ana Valad?o (2)
Marcela Dreschsel (4)
Flávia Freitas (2)
Marcia Vidal (4)
Helma Guedes (4)
Elisete Rodrigues (4)
Carlos Meneses (4)
Paulo Brioso (5)
Luciana Pozzer (5)
Daniel Figueiredo (5)
Helena Montano (5)
Jadier Junior (5)
Gon?alo de Souza Filho (6)
Victor Martin Quintana Flores (6)
Beatriz Ferreira (6)
Alan Branco (6)
Paula Gonzalez (7)
Heloisa Guillobel (7)
Melissa Lemos (8)
Luiz Seibel (8)
José Macedo (8)
Marcio Alves-Ferreira (9)
Gilberto Sachetto-Martins (9)
Ana Coelho (9)
Eidy Santos (9)
Gilda Amaral (9)
Anna Neves (9)
Ana Beatriz Pacheco (10)
Daniela Carvalho (10)
Letícia Lery (10)
Paulo Bisch (10)
Shaila C R?ssle (10)
Turán ürményi (10)
Alessandra Rael Pereira (2)
Rosane Silva (10)
Edson Rondinelli (10)
Wanda von Krüger (10)
Orlando Martins (1)
José Ivo Baldani (4)
Paulo CG Ferreira (1) (12)
1. UFRJ, CCS, Bloco D, Instituto de Bioquímica Médica, 21491-590, subssolo, Rio de Janeiro, Brazil
2. Departamento de Bioquímica,UERJ, Instituto de Biologia Roberto Alcantara Gomes, Blv 28 de Setembro, 87, fundos, 4 andar, RJ 20551-013, Vila Isabel, Rio de Janeiro, Brazil
3. Laboratório de Tecnologia em Bioquímica e Microscopia, Centro Universitário Estadual da Zona Oeste, 23070-200, Rio de Janeiro, Brazil
4. Embrapa Agrobiologia BR465, Km 07 Seropédica Rio de Janeiro, 23851-970, Brazil
12. Laboratório de Biologia Molecular de Plantas,Botanico do Rio de Janeiro,Rio de Janeiro, Instituto de Pesquisas do Jardim, 22460-030, RJ, Brazil
11. Laboratório de Biologia Molecular, Departamento de Genética e Biologia Molecular,Rio de Janeiro, Universidade Federal do Estado do Rio de Janeiro, 22290-240, RJ, Brazil
5. Instituto de Biologia, Departamento de Entomologia e Fitopatologia, Universidade Federal Rural do Rio de Janeiro, Cx Postal 74585/BR 465, KM 07, 23851-970, Seropédica, RJ
6. Lab. Biotecnologia-Alberto Lamego 2000 Campos dos Goytacazes, Centro de Biociências e Biotecnologia Universidade Estadual do Norte Fluminense- Av., 28013-620, RJ, Brazil
7. Departamento de Biofísica e Biometria,87, fundos, 4 andar,Rio de Janeiro, Instituto de Biologia Roberto Alcantara Gomes UERJ, Blv 28 de Setembro, 20551-013, Vila Isabel, RJ, Brazil
8. Departamento de Informática, 225, Pontifícia Universidade Católica do Rio de Janeiro Rua Marquês de S. Vicente, 22453-900, Rio de Janeiro, Brazil
9. Departamento de Genética, Instituto de Biologia,Rio de Janeiro, Universidade Federal do Rio de Janeiro, 68011, 21941-617, RJ, Brazil
10. Instituto de Biofísica Carlos Chagas Filho Universidade Federal do Rio de Janeiro, CCS, Cidade Universitária, RJ21.949-900, Rio de Janeiro, Brazil
文摘
Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of auxin and the occurrence of bacteriocins. Results Gluconacetobacter diazotrophicus Pal5 is the third diazotrophic endophytic bacterium to be completely sequenced. Its genome is composed of a 3.9 Mb chromosome and 2 plasmids of 16.6 and 38.8 kb, respectively. We annotated 3,938 coding sequences which reveal several characteristics related to the endophytic lifestyle such as nitrogen fixation, plant growth promotion, sugar metabolism, transport systems, synthesis of auxin and the occurrence of bacteriocins. Genomic analysis identified a core component of 894 genes shared with phylogenetically related bacteria. Gene clusters for gum-like polysaccharide biosynthesis, tad pilus, quorum sensing, for modulation of plant growth by indole acetic acid and mechanisms involved in tolerance to acidic conditions were identified and may be related to the sugarcane endophytic and plant-growth promoting traits of G. diazotrophicus. An accessory component of at least 851 genes distributed in genome islands was identified, and was most likely acquired by horizontal gene transfer. This portion of the genome has likely contributed to adaptation to the plant habitat. Conclusion The genome data offer an important resource of information that can be used to manipulate plant/bacterium interactions with the aim of improving sugarcane crop production and other biotechnological applications.