Temporal dynamics of microbial communities in the rhizosphere of two genetically modified (GM) maize hybrids in tropical agrosystems
详细信息    查看全文
  • 作者:Simone Raposo Cotta (1)
    Armando Cavalcante Franco Dias (2)
    Ivanildo Evódio Marriel (3)
    Eliane Aparecida Gomes (3)
    Jan Dirk van Elsas (4)
    Lucy Seldin (1)
  • 关键词:PCR ; DGGE ; Rhizosphere ; Transgenic crops ; Genetically modified (GM) maize
  • 刊名:Antonie van Leeuwenhoek
  • 出版年:2013
  • 出版时间:March 2013
  • 年:2013
  • 卷:103
  • 期:3
  • 页码:589-601
  • 全文大小:780KB
  • 参考文献:1. Anderson IC, Campbell CD, Prosser JI (2003a) Diversity of fungi in organic soils under a moorland-Scots pine ( / Pinus sylvestris L.) gradient. Environ Microbiol 11:1121-132 CrossRef
    2. Anderson IC, Campbell CD, Prosser JI (2003b) Potential bias of fungal 18S rRNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil. Environ Microbiol 1:36-7 CrossRef
    3. Andreote FD, Mendes R, Dini-Andreote F, Rossetto PB, Labate CA, Pizzirani-Kleiner AA, van Elsas JD, Azevedo JL, Araújo WL (2008) Transgenic tobacco revealing altered bacterial diversity in the rhizosphere during early plant development. Antonie Van Leeuwenhoek 93:415-24 CrossRef
    4. Andreote FD, Carneiro RT, Salles JF, Marcon J, Labate CA, Azevedo JL, Araújo WL (2009) Culture-independent assessment of Alphaproteobacteria related to order Rhizobiales and the diversity of cultivated / Methylobacterium in the rhizosphere and rhizoplane of transgenic eucalyptus. Microb Ecol 57:82-3 CrossRef
    5. Bach HJ, Tomanova J, Schloter JC, Munch JC (2002) Enumeration of total bacteria with genes for proteolytic activity in pure cultures and in environmental samples by quantitative PCR mediated amplification. J Microbiol Methods 49:235-45 CrossRef
    6. Badea EM, Chelu F, Lacatusu A (2010) Results regarding the levels of Cry1Ab protein in transgenic corn tissue (MON810) and the fate of Bt protein in three soil types. Rom Biotechnol Lett 15:55-2
    7. Barriuso J, Valverde JR, Mellado RP (2012) Effect of Cry1Ab protein on rhizobacterial communities of Bt-maize over a four-year cultivation period. PLoS ONE 7:e35481 CrossRef
    8. Baumgarten S, Tebbe CC (2005) Field studies on the environmental fate of the Cry1Ab Bt-toxin produced by transgenic maize (MON810) and its effect on bacterial communities in the maize rhizosphere. Mol Ecol 14:2539-551 CrossRef
    9. Blackwood CB, Buyer JS (2004) Soil microbial communities associated with Bt and non-Bt corn in three soils. J Environ Qual 33:832-36 CrossRef
    10. Bruinsma M, Kowalchuk GA, van Veen JA (2003) Effects of genetically modified plants on microbial communities and processes in soil. Biol Fertil Soils 37:329-37
    11. Carpenter JE (2011) Impacts of GM crops on biodiversity. GM Crops 1:1-7
    12. Castaldini M, Turrini A, Sbrana C, Beneditti A, Marchionni M, Mocali S, Fabiani A, Landi S, Santomassimo F, Pietrangeli B, Nuti MP, Miclaus N, Giovannetti M (2005) Impact of Bt corn in rhizospheric and soil eubacterial communities and on beneficial mycorrhizal symbiosis in experimental microcosms. Appl Environ Microbiol 71:6719-729 CrossRef
    13. Chauhan PS, Chaudhry V, Mishra S, Nautiyal CS (2011) Uncultured bacterial diversity in tropical maize ( / Zea mays L.) rhizosphere. J Basic Microbiol 51:15-2 CrossRef
    14. Chiarini L, Bevivino A, Dalmastri C, Nacamulli C, Tabacchioni S (1998) Influence of plants development, cultivar and soil type on microbial colonization of maize root. Appl Soil Ecol 8:11-8 CrossRef
    15. Chun YJ, Kim DY, Kim HJ, Park KW, Jeong S-C, Park S, Lee B, Ham CH, Kim HM, Kim C-G (2011) Do transgenic chili pepper plants producing viral coat protein affect the structure of a soil microbial community? Appl Soil Ecol 51:130-38 CrossRef
    16. da Silva KRA, Salles JF, Seldin L, van Elsas JD (2003) Application of a novel / Paenibacillus-specific PCR-DGGE method and sequence analysis to assess the diversity of / Paenibacillus spp. in the maize rhizosphere. J Microbiol Methods 54:213-31 CrossRef
    17. di Giovanni GD, Watrud LS, Seidler RJ, Widmer F (1999) Comparison of parental and transgenic alfalfa rhizosphere bacterial communities using BIOLOG GN metabolic fingerprinting and Enterobacterial Intergenic Consensus Sequence-PCR (ERIC-PCR). Microbiol Ecol 37:129-39 CrossRef
    18. Dively GP, Rose R, Sears MK, Hellmich RL, Stanley-Horn DE, Calvin DD, Russo JM, Anderson PL (2004) Effects on monarch butterfly larvae (Lepidoptera: Danaidae) after continuous exposure to Cry1Ab-expressing corn during anthesis. Ann Entomol Soc Am 33:1116-125
    19. Donegan KK, Seidler RJ, Porteous LA, Digiovanni G, Widmer F, Watrud LS (1999) A field study with genetically engineered alfafa inoculated with recombinant / Sinorhizobium meliloti: effects on the soil ecosystem. J Appl Ecol 6:920-36 CrossRef
    20. Dunfield KE, Germida JJ (2004) Impact of genetically modified crops on soil-and plant-associated microbial communities. J Environ Qual 33:806-15 CrossRef
    21. Eichner CA, Erb RW, Timmis KN, Wagner-Dobler I (1999) Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community. Appl Environ Microbiol 65:102-09
    22. Feng Y, Ling L, Fan H, Liu Y, Tan F, Shu Y, Wang J (2011) Effects of temperature, water content and pH on degradation of Cry1Ab protein released from Bt corn straw in soil. Soil Biol Biochem 43:1600-606 CrossRef
    23. Garbeva P, van Veen JA, van Elsas JD (2004) Microbial diversity in soil: selection of microbial populations by plant and soil type and applications for disease suppressiveness. Annu Rev Phytopathol 42:243-70 CrossRef
    24. Gelsomino A, Keijzer-Wolters AC, Cacco G, van Elsas JD (1999) Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis. J Microbiol Methods 38:1-5 CrossRef
    25. Gruber H, Paul V, Meyer HHD, Müller M (2012) Determination of insecticidal Cry1Ab protein in soil collected in the final growing seasons of a nine-year field trial of Bt-maize MON810. Transgenic Res 21:77-8 CrossRef
    26. Hanulla SE, Boschker HTS, de Boer W, van Veen JA (2012) 13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato ( / Solanum tuberosum) cultivar and its parental isoline. New Phytol 194:784-99 CrossRef
    27. Helassa N, Charek AM, Quiquampoix H, Noinville S, Déjardin P, Frutos R, Staunton S (2011) Effects of physicochemical interactions and microbial activity on the persistence of Cry1Ab Bt ( / Bacillus thuringiensis) toxin in soil. Soil Biol Biochem 5:1089-097 CrossRef
    28. Heuer H, Krsek M, Baker P, Smalla K, Wellington EMH (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel electrophoretic separation in denaturing gels. Appl Environ Microbiol 8:3233-241
    29. Icoz I, Stotzky G (2007) Cry3Bb1 protein from / Bacillus thuringiensis in root exudates and biomass of transgenic corn does not persist in soil. Transgenic Res 4:609-20
    30. Icoz I, Stotzky G (2008) Fate and effects of insect-resistant Bt crops in soil ecosystems. Soil Biol Biochem 40:559-86 CrossRef
    31. James C (2010) Global status of commercialized biotech/GM Crops: ISAAA Brief No. 42. ISAAA: Ithaca, NY
    32. Jurelevicius D, Korenblum E, Casella R, Vital RL, Seldin L (2010) Polyphasic analysis of bacterial community in the rhizosphere and roots of / Cyperus rotundus L. grown in a petroleum-contaminated soil. J Microbiol Biotechnol 5:862-70 CrossRef
    33. Lamarche J, Hamelin RC (2007) No evidence of an impact on the rhizosphere diazotroph community by the expression of / Bacillus thuringiensis Cry1Ab toxin by Bt white spruce. Applied Environ Microbiol 73:6577-583 CrossRef
    34. Lee S-H, Kim C-G, Kang H (2011) Temporal dynamics of bacterial and fungal communities in a genetically modified (GM) rice ecosystem. Microbiol Ecol 61:646-59 CrossRef
    35. Leps J, Smilauer P (2003) Multivariate analysis of ecological data using CANOCO. University Press, Cambridge CrossRef
    36. Lynch JM, Benedetti A, Insam H, Nuti MP, Smalla K, Torsvik V, Nannipieri P (2004) Microbial diversity in soil: ecological theories, the contribution of molecular techniques and the impact of transgenic plants and transgenic microorganism. Biol Fertil Soils 40:363-85 CrossRef
    37. McLaren J, Copping L (2011) Transgenic maize—the registration status of lines that have been commercialised: the first in a series that examines the GM crop market. Outlooks Pest Manag 2:66-3 CrossRef
    38. Motavalli PP, Kremer RJ, Fang M, Means NE (2004) Impact of genetically modified crops and their management on soil microbial mediated plant nutrient transformations. J Environ Qual 33:816-24 CrossRef
    39. Muyzer G, de Wall EC, Uitterlinden AG (1993) Profiling of complex microbial population by denaturing gradient gel electrophoresis analysis of polymerase chain reaction—amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-00
    40. Nübel U, Engelen B, Felske A, Snaidr J, Wieshuber A, Amann RI, Ludwig W, Backhaus H (1996) Sequence heterogeneities of genes encoding 16S rRNAs in / Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J Bacteriol 19:5636-643
    41. Raybould A, Higgins LS, Horak MJ, Layton RJ, Storer NP, de la Fuente JM, Herman RA (2011) Assessing the ecological risks from the persistence and spread of feral populations of insect-resistant transgenic maize. Transgenic Res 3:55-4
    42. Rui YK, Yi GX, Zhao J, Wang BM, Li ZH, Zhai ZX, He ZP, Li QX (2005) Changes of Bt toxin in the rhizosphere of transgenic Bt cotton and its influence on soil functional bacteria. World J Microbiol Biotechnol 21:1279-284 CrossRef
    43. Salles JF, van Veen JA, van Elsas JD (2004) Multivariate analyses of / Burkholderia species in soil: effect of crop and land use history. Appl Environ Microbiol 70:4012-020 CrossRef
    44. Sambrook J, Fritsch EF, Manniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
    45. Saxena D, Stotzky G (2001) / Bacillus thuringiensis (Bt) toxin released from root exudates and biomass of Bt corn has no apparent effect on earthworms, nematodes, protozoa, bacteria, and fungi in soil. Soil Biol Biochem 33:1225-230 CrossRef
    46. Saxena D, Flores S, Stotzky G (2002) Bt toxin is released in root exudates from 12 transgenic corn hybrids representing three transformation events. Soil Biol Biochem 34:133-37 CrossRef
    47. Seldin L, Rosado AS, da Cruz DW, Nobrega A, van Elsas JD (1998) Comparison of / Paenibacillus azotofixans isolated from rhizoplane, rhizosphere, and non-root associated soil from maize planted in two different Brazilian soils. Appl Environ Microbiol 64:3860-868
    48. Semenov AV, Pereira e Silva MC, Szuturc-Koestsier AE, Schmitt H, Salles JF, van Elsas JD (2012) Impact of incorporated fresh 13C potato tissues on the bacterial and fungal community composition of soil. Soil Biol Biochem 49:88-5
    49. Tan F, Wang J, Feng Y, Chi G, Kong H, Qiu H, Wei S (2010) / Bt corn plants and their straw have no apparent impact on soil microbial communities. Plant Soil 329:349-64 CrossRef
    50. Tan F, Wang J, Chen Z, Feng Y, Chi G, Rehman SU (2011) Assessment of the arbuscular mycorrhizal fungal community in roots and rhizosphere soils of Bt corn and their non-Bt isolines. Soil Biol Biochem 43:2473-479 CrossRef
    51. Van Veen JA, van Overbeek LS, van Elsas JD (1997) Fate and activity of microorganisms introduced into soil. Microbiol Mol Biol Rev 61:121-35
    52. Yu HL, Li YH, Wu KM (2011) Risk assessment and ecological effects of transgenic / Bacillus thuringiensis crops on non-target organisms. J Integrative Plant Biol 7:520-38 CrossRef
  • 作者单位:Simone Raposo Cotta (1)
    Armando Cavalcante Franco Dias (2)
    Ivanildo Evódio Marriel (3)
    Eliane Aparecida Gomes (3)
    Jan Dirk van Elsas (4)
    Lucy Seldin (1)

    1. Laboratório de Genética Microbiana, Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Centro de Ciências da Saúde, Bloco I Ilha do Fund?o, Rio de Janeiro, RJ, CEP 21941-590, Brazil
    2. Departamento de Ciência do Solo, Escola Superior de Agricultura Luiz de Queiroz, Universidade de S?o Paulo, Piracicaba, SP, Brazil
    3. EMBRAPA/CNPMS - Empresa Brasileira de Pesquisa Agropecuária, Centro Nacional de Pesquisas de Milho e Sorgo, Sete Lagoas, MG, Brazil
    4. Department of Microbial Ecology, Center for Ecological and Evolutionary Studies (CEES), University of Groningen (RUG), Nijenborgh 7, 9747 AG, Groningen, The Netherlands
  • ISSN:1572-9699
文摘
The use of genetically modified (GM) plants still raises concerns about their environmental impact. The present study aimed to evaluate the possible effects of GM maize, in comparison to the parental line, on the structure and abundance of microbial communities in the rhizosphere. Moreover, the effect of soil type was addressed. For this purpose, the bacterial and fungal communities associated with the rhizosphere of GM plants were compared by culture-independent methodologies to the near-isogenic parental line. Two different soils and three stages of plant development in two different periods of the year were included. As evidenced by principal components analysis (PCA) of the PCR-DGGE profiles of evaluated community, clear differences occurred in these rhizosphere communities between soils and the periods of the year that maize was cultivated. However, there were no discernible effects of the GM lines as compared to the parental line. For all microbial communities evaluated, soil type and the period of the year that the maize was cultivated were the main factors that influenced their structures. No differences were observed in the abundances of total bacteria between the rhizospheres of GM and parental plant lines.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700