Engineering of Serine-Deamination pathway, Entner-Doudoroff pathway and pyruvate dehydrogenase complex to improve poly(3-hydroxybutyrate) production in Escherichia coli
详细信息    查看全文
  • 作者:Yan Zhang (1) (2) (3) (5)
    Zhenquan Lin (1) (2) (3) (5)
    Qiaojie Liu (1) (2) (3) (5)
    Yifan Li (1) (2) (3) (5)
    Zhiwen Wang (1) (2) (3) (5)
    Hongwu Ma (4)
    Tao Chen (1) (2) (3) (5)
    Xueming Zhao (1) (2) (3) (5)

    1. Key Laboratory of Systems Bioengineering (Ministry of Education)
    ; Tianjin University ; Tianjin ; 300072 ; People鈥檚 Republic of China
    2. SynBio Research Platform
    ; Collaborative Innovation Center of Chemical Science and Engineering (Tianjin) ; School of Chemical Engineering and Technology ; Tianjin University ; Tianjin ; 300072 ; People鈥檚 Republic of China
    3. Edinburg-Tianjin Joint Research Centre for Systems Biology and Synthetic Biology
    ; Tianjin University ; Tianjin ; 300072 ; People鈥檚 Republic of China
    5. Department of Biochemical Engineering
    ; School of Chemical Engineering and Technology ; Tianjin University ; Tianjin ; 300072 ; China
    4. Key Laboratory of Systems Microbial Biotechnology
    ; Tianjin Institute of Industrial Biotechnology ; Chinese Academy of Sciences ; Tianjin ; 300308 ; People鈥檚 Republic of China
  • 关键词:Escherichia coli ; poly(3 ; hydroxybutyrate) ; L ; serine deaminate ; Entner ; Doudoroff pathway ; Pyruvate dehydrogenase complex
  • 刊名:Microbial Cell Factories
  • 出版年:2014
  • 出版时间:December 2014
  • 年:2014
  • 卷:13
  • 期:1
  • 全文大小:603 KB
  • 参考文献:1. Gao, X, Chen, JC, Wu, Q, Chen, GQ (2011) Polyhydroxyalkanoates as a source of chemicals, polymers, and biofuels. Curr Opin Biotechnol 22: pp. 768-774 CrossRef
    2. Choi, JI, Lee, SY (1999) High-level production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) by fed-batch culture of recombinant Escherichia coli. Appl Environ Microbiol 65: pp. 4363-4368
    3. Choi, J, Lee, SY (1999) Efficient and economical recovery of poly(3-hydroxybutyrate) from recombinant Escherichia coli by simple digestion with chemicals. Biotechnol Bioeng 62: pp. 546-553 CrossRef
    4. Lee, SH, Kang, KH, Kim, EY, Chae, TU, Oh, YH, Hong, SH, Song, BK, Jegals, J, Park, SJ, Lee, SY (2013) Metabolic engineering of Escherichia coli for enhanced biosynthesis of poly(3-hydroxybutyrate) based on proteome analysis. Biotechnol Lett 35: pp. 1631-1637 CrossRef
    5. Kabir, MM, Shimizu, K (2003) Gene expression patterns for metabolic pathway in pgi knockout Escherichia coli with and without phb genes based on RT-PCR. J Biotechnol 105: pp. 11-31 CrossRef
    6. Jung, YM, Lee, JN, Shin, HD, Lee, YH (2004) Role of tktA gene in pentose phosphate pathway on odd-ball biosynthesis of poly-beta-hydroxybutyrate in transformant Escherichia coli harboring phbCAB operon. J Biosci Bioeng 98: pp. 224-227 CrossRef
    7. Song, BG, Kim, TK, Jung, YM, Lee, YH (2006) Modulation of talA gene in pentose phosphate pathway for overproduction of poly-beta-hydroxybutyrate in transformant Escherichia coli harboring phbCAB operon. J Biosci Bioeng 102: pp. 237-240 CrossRef
    8. Lim, SJ, Jung, YM, Shin, HD, Lee, YH (2002) Amplification of the NADPH-related genes zwf and gnd for the oddball biosynthesis of PHB in an E. coli transformant harboring a cloned phbCAB operon. J Biosci Bioeng 93: pp. 543-549 CrossRef
    9. Centeno-Leija, S, Huerta-Beristain, G, Giles-Gomez, M, Bolivar, F, Gosset, G, Martinez, A (2014) Improving poly-3-hydroxybutyrate production in Escherichia coli by combining the increase in the NADPH pool and acetyl-CoA availability. Antonie Van Leeuwenhoek 105: pp. 687-696 CrossRef
    10. Postma, PW, Lengeler, JW, Jacobson, GR (1993) Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteria. Microbiol Rev 57: pp. 543-594
    11. Han, MJ, Yoon, SS, Lee, SY (2001) Proteome analysis of metabolically engineered Escherichia coli producing Poly(3-hydroxybutyrate). J Bacteriol 183: pp. 301-308 CrossRef
    12. Hong, SH, Park, SJ, Moon, SY, Park, JP, Lee, SY (2003) In silico prediction and validation of the importance of the Entner-Doudoroff pathway in poly(3-hydroxybutyrate) production by metabolically engineered Escherichia coli. Biotechnol Bioeng 83: pp. 854-863 CrossRef
    13. Su, HS, Lang, BF, Newman, EB (1989) L-serine degradation in Escherichia coli K-12: cloning and sequencing of the sdaA gene. J Bacteriol 171: pp. 5095-5102
    14. Zhang, X, Newman, E (2008) Deficiency in L-serine deaminase results in abnormal growth and cell division of Escherichia coli K-12. Mol Microbiol 69: pp. 870-881 CrossRef
    15. Quail, MA, Haydon, DJ, Guest, JR (1994) The pdhR-aceEF-lpd operon of Escherichia coli expresses the pyruvate dehydrogenase complex. Mol Microbiol 12: pp. 95-104 CrossRef
    16. Knappe, J, Blaschkowski, HP, Grobner, P, Schmitt, T (1974) Pyruvate formate-lyase of Escherichia coli: the acetyl-enzyme intermediate. Eur J Biochem 50: pp. 253-263 CrossRef
    17. Netzer, R, Peters-Wendisch, P, Eggeling, L, Sahm, H (2004) Cometabolism of a nongrowth substrate: L-serine utilization by Corynebacterium glutamicum. Appl Environ Microbiol 70: pp. 7148-7155 CrossRef
    18. Peters-Wendisch, P, Netzer, R, Eggeling, L, Sahm, H (2002) 3-Phosphoglycerate dehydrogenase from Corynebacterium glutamicum: the C-terminal domain is not essential for activity but is required for inhibition by L-serine. Appl Microbiol Biotechnol 60: pp. 437-441 CrossRef
    19. Cicchillo, RM, Baker, MA, Schnitzer, EJ, Newman, EB, Krebs, C, Booker, SJ (2004) Escherichia coli L-serine deaminase requires a [4Fe-4S] cluster in catalysis. J Biol Chem 279: pp. 32418-32425 CrossRef
    20. Fu, TF, Boja, ES, Safo, MK, Schirch, V (2003) Role of proline residues in the folding of serine hydroxymethyltransferase. J Biol Chem 278: pp. 31088-31094 CrossRef
    21. Miller, BA, Newman, EB (1974) Control of serine transhydroxymethylase synthesis in Escherichia coli K12. Can J Microbiol 20: pp. 41-47 CrossRef
    22. Newman, EB, Magasanik, B (1963) The Relation of Serine鈥揋lycine Metabolism to the Formation of Single-Carbon Units. Biochim Biophys Acta 78: pp. 437-448 CrossRef
    23. Lai, S, Zhang, Y, Liu, S, Liang, Y, Shang, X, Chai, X, Wen, T (2012) Metabolic engineering and flux analysis of Corynebacterium glutamicum for L-serine production. Sci China Life Sci 55: pp. 283-290 CrossRef
    24. Friehs, K (2004) Plasmid copy number and plasmid stability. Adv Biochem Eng Biotechnol 86: pp. 47-82
    25. Jones, KL, Kim, SW, Keasling, JD (2000) Low-copy plasmids can perform as well as or better than high-copy plasmids for metabolic engineering of bacteria. Metab Eng 2: pp. 328-338 CrossRef
    26. Yamane, T (1993) Yield of poly-D(-)-3-hydroxybutyrate from various carbon sources: a theoretical study. Biotechnol Bioeng 41: pp. 165-170 CrossRef
    27. Fraenkel, DG, Levisohn, SR (1967) Glucose and gluconate metabolism in an Escherichia coli mutant lacking phosphoglucose isomerase. J Bacteriol 93: pp. 1571-1578
    28. Phue, JN, Shiloach, J (2004) Transcription levels of key metabolic genes are the cause for different glucose utilization pathways in E. coli B (BL21) and E. coli K (JM109). J Biotechnol 109: pp. 21-30 CrossRef
    29. Abdel-Hamid, AM, Attwood, MM, Guest, JR (2001) Pyruvate oxidase contributes to the aerobic growth efficiency of Escherichia coli. Microbiology 147: pp. 1483-1498
    30. Nikel, PI, Giordano, AM, Almeida, A, Godoy, MS, Pettinari, MJ (2010) Elimination of D-lactate synthesis increases poly(3-hydroxybutyrate) and ethanol synthesis from glycerol and affects cofactor distribution in recombinant Escherichia coli. Appl Environ Microbiol 76: pp. 7400-7406 CrossRef
    31. Nduko, JM, Matsumoto, K, Ooi, T, Taguchi, S (2013) Effectiveness of xylose utilization for high yield production of lactate-enriched P(lactate-co-3-hydroxybutyrate) using a lactate-overproducing strain of Escherichia coli and an evolved lactate-polymerizing enzyme. Metab Eng 15: pp. 159-166 CrossRef
    32. Meur, S, Zinn, M, Egli, T, Thony-Meyer, L, Ren, Q (2013) Poly(4-hydroxybutyrate) (P4HB) production in recombinant Escherichia coli: P4HB synthesis is uncoupled with cell growth. Microb Cell Fact 12: pp. 123 CrossRef
    33. Quan, J, Tian, J (2011) Circular polymerase extension cloning for high-throughput cloning of complex and combinatorial DNA libraries. Nat Protoc 6: pp. 242-251 CrossRef
    34. Spiekermann, P, Rehm, BH, Kalscheuer, R, Baumeister, D, Steinbuchel, A (1999) A sensitive, viable-colony staining method using Nile red for direct screening of bacteria that accumulate polyhydroxyalkanoic acids and other lipid storage compounds. Arch Microbiol 171: pp. 73-80 CrossRef
    35. Kuhlman, TE, Cox, EC (2010) Site-specific chromosomal integration of large synthetic constructs. Nucleic Acids Res 38: pp. e92 CrossRef
    36. Lin, Z, Xu, Z, Li, Y, Wang, Z, Chen, T, Zhao, X (2014) Metabolic engineering of Escherichia coli for the production of riboflavin. Microbial Cell Factories 13: pp. 104
    37. Zhao, J, Li, Q, Sun, T, Zhu, X, Xu, H, Tang, J, Zhang, X, Ma, Y (2013) Engineering central metabolic modules of Escherichia coli for improving beta-carotene production. Metab Eng 17: pp. 42-50 CrossRef
    38. Li, ZJ, Cai, L, Wu, Q, Chen, GQ (2009) Overexpression of NAD kinase in recombinant Escherichia coli harboring the phbCAB operon improves poly(3-hydroxybutyrate) production. Appl Microbiol Biotechnol 83: pp. 939-947 CrossRef
    39. Zhu, N, Xia, H, Wang, Z, Zhao, X, Chen, T (2013) Engineering of acetate recycling and citrate synthase to improve aerobic succinate production in Corynebacterium glutamicum. PLoS One 8: pp. e60659 CrossRef
    40. Boynton, ZL, Bennett, GN, Rudolph, FB (1994) Intracellular concentrations of coenzyme A and its derivatives from Clostridium acetobutylicum ATCC 824 and their roles in enzyme regulation. Appl Environ Microbiol 60: pp. 39-44
    41. Fu, J, Wang, Z, Chen, T, Liu, W, Shi, T, Wang, G, Tang, YJ, Zhao, X (2014) NADH plays the vital role for chiral pure D-(-)-2,3-butanediol production in Bacillus subtilis under limited oxygen conditions. Biotechnol Bioeng 111: pp. 2126-2131 CrossRef
    42. Livak, KJ, Schmittgen, TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: pp. 402-408 CrossRef
  • 刊物类别:Chemistry and Materials Science
  • 刊物主题:Biotechnology
    Applied Microbiology
    Environmental Engineering/Biotechnology
  • 出版者:BioMed Central
  • ISSN:1475-2859
文摘
Background Poly(3-hydroxybutyrate) (PHB), a biodegradable bio-plastic, is one of the most common homopolymer of polyhydroxyalkanoates (PHAs). PHB is synthesized by a variety of microorganisms as intracellular carbon and energy storage compounds in response to environmental stresses. Bio-based production of PHB from renewable feedstock is a promising and sustainable alternative to the petroleum-based chemical synthesis of plastics. In this study, a novel strategy was applied to improve the PHB biosynthesis from different carbon sources. Results In this research, we have constructed E. coli strains to produce PHB by engineering the Serine-Deamination (SD) pathway, the Entner-Doudoroff (ED) pathway, and the pyruvate dehydrogenase (PDH) complex. Firstly, co-overexpression of sdaA (encodes L-serine deaminase), L-serine biosynthesis genes and pgk (encodes phosphoglycerate kinase) activated the SD Pathway, and the resulting strain SD02 (pBHR68), harboring the PHB biosynthesis genes from Ralstonia eutropha, produced 4.86 g/L PHB using glucose as the sole carbon source, representing a 2.34-fold increase compared to the reference strain. In addition, activating the ED pathway together with overexpressing the PDH complex further increased the PHB production to 5.54 g/L with content of 81.1% CDW. The intracellular acetyl-CoA concentration and the [NADPH]/[NADP+] ratio were enhanced after the modification of SD pathway, ED pathway and the PDH complex. Meanwhile, these engineering strains also had a significant increase in PHB concentration and content when xylose or glycerol was used as carbon source. Conclusions Significant levels of PHB biosynthesis from different kinds of carbon sources can be achieved by engineering the Serine-Deamination pathway, Entner-Doudoroff pathway and pyruvate dehydrogenase complex in E. coli JM109 harboring the PHB biosynthesis genes from Ralstonia eutropha. This work demonstrates a novel strategy for improving PHB production in E. coli. The strategy reported here should be useful for the bio-based production of PHB from renewable resources.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700