Evaluating the prevalence and molecular epidemiology of echovirus 11 isolated from sewage in Shandong Province, China in 2010

详细信息    查看全文

• 作者：Jing Yang (1)
  Ning Cui (2)
  Haiyan Wang (3)
  Zexin Tao (3)
  Yao Liu (3)
  Heng Zhang (5)
  Hiromu Yoshida (6)
  Yanyan Song (1) yysong@sdu.edu.cn
  Yong Zhang (7)
  Lizhi Song (3)
  Yan Li (3)
  Xiaojuan Lin (3)
  Shengxiang Ji (8)
  Wenbo Xu (7)
  Aiqiang Xu (134) aqxuepi@163.com
• 关键词：Echovirus 11 &#8211 ; Environmental surveillance &#8211 ; VP1 &#8211 ; Phylogenetic analysis &#8211 ; Molecular epidemiology
• 刊名：Virus Genes
• 出版年：2012
• 出版时间：June 2012
• 年：2012
• 卷：44
• 期：3
• 页码：388-394
• 全文大小：383.8 KB
• 参考文献：1. M.S. Oberste, W.A. Nix, D.R. Kilpatrick, M.R. Flemister, M.A. Pallansch, Virus Res. 91, 241 (2003)
  2. S. Chevaliez, A. Szendr枚i, V. Caro, J. Balanant, S. Guillot, G. Berencsi, F. Delpeyroux, Virology 325, 56 (2004)
  3. C. Savolainen-Kopra, H. Al-Hello, A. Paananen, S. Blomqvist, P. Klemola, Z. Sobotova, M. Roivainen, Virus Res. 139, 32 (2009)
  4. A.N. Lukashev, V.A. Lashkevich, G.A. Koroleva, G.G. Karganova, Arch. Virol. 147, 131 (2002)
  5. M.J. Abzug, Paediatr. Drugs 6, 1 (2004)
  6. H.G. Cramblett, R.E. Haynes, P.H. Azimi, M.D. Hilty, M.H. Wilder, Pediatrics 51, 603 (1973)
  7. Y. Zhao, Q. Jiang, R. Jiang, L. Chen, D.S. Perlin, Emerg. Infect. Dis. 11, 562 (2005)
  8. Y. Zhang, X. Tan, H. Wang, D.M. Yan, S.L. Zhu, D.Y. Wang, F. Ji, X.J. Wang, Y.J. Gao, L. Chen, H.Q. An, D.X. Li, S.W. Wang, A.Q. Xu, Z.J. Wang, W.B. Xu, J. Clin. Virol. 44, 262 (2009)
  9. M.S. Oberste, K. Maher, M.R. Flemister, G. Marchetti, D.R. Kilpatrick, M.A. Pallansch, J. Clin. Microbiol. 38, 1170 (2000)
  10. B. Ortner, C.W. Huang, D. Schmid, I. Mutz, G. Wewalka, F. Allerberger, J.Y. Yang, H.P. Huemer, J. Med. Virol. 81, 317 (2009)
  11. T. Bingjun, H. Yoshida, W. Yan, L. Lin, T. Tsuji, H. Shimizu, T. Miyamura, J. Med. Virol. 80, 670 (2008)
  12. G. Sedmak, D. Bina, J. MacDonald, Appl. Environ. Microbiol. 69, 7181 (2003)
  13. D. Papaventsis, N. Siafakas, P. Markoulatos, G.T. Papageorgiou, C. Kourtis, E. Chatzichristou, C. Economou, S. Levidiotou, Appl. Environ. Microbiol. 71, 72 (2005)
  14. M. Iwai, H. Yoshida, K. Matsuura, T. Fujimoto, H. Shimizu, T. Takizawa, Y. Nagai, Appl. Environ. Microbiol. 72, 6381 (2006)
  15. M.J. Bouchard, D.H. Lam, V.R. Racaniello, J. Virol. 69, 4972 (1995)
  16. C.L. Cameron-Wilson, Y.A. Pandolfino, H.Y. Zhang, B. Pozzeto, L.C. Archard, Clin. Diagn. Virol. 9, 99 (1998)
  17. S. Halim, A.I. Ramsingh, Virology 269, 86 (2000)
  18. K.K. Tee, T.T. Lam, Y.F. Chan, J.M. Bible, A. Kamarulzaman, C.Y. Tong, Y. Takebe, O.G. Pybus, J. Virol. 84, 3339 (2010)
  19. Z. Tao, H. Wang, A. Xu, Y. Zhang, L. Song, S. Zhu, Y. Li, D. Yan, G. Liu, H. Yoshida, Y. Liu, L. Feng, T. Chosa, W. Xu, Virus Res. 150, 56 (2010)
  20. Z. Tao, H. Wang, Y. Li, A. Xu, Y. Zhang, L. Song, H. Yoshida, Q. Xu, J. Yang, Y. Zhang, Y. Liu, L. Feng, W. Xu, Appl. Environ. Microbiol. 77, 3786 (2011)
  21. WHO, Polio laboratory manual, 4th edn. (WHO, Geneva, 2004)
  22. M.S. Oberste, K. Maher, D.R. Kilptrick, M.A. Pallansch, J. Virol. 73, 1941 (1999)
  23. K. Tamura, J. Dudley, M. Nei, S. Kumar, Mol. Biol. Evol. 24, 1596 (2007)
  24. J.M. Deshpande, S.J. Shetty, Z.A. Siddiqui, Appl. Environ. Microbiol. 69, 2919 (2003)
  25. E.C. McWilliam Leitch, M. Cabrerizo, J. Cardosa, H. Harvala, O.E. Ivanova, A.C. Kroes, A. Lukashev, P. Muir, J. Odoom, M. Roivainen, P. Susi, G. Trallero, D.J. Evans, P. Simmonds, J. Virol. 84, 9292 (2010)
• 作者单位：1. Department of Epidemiology, School of Public Health, Shandong University, 44 Wenhuaxi Road, Lixia District, Jinan, 250012 People鈥檚 Republic of China2. Department of Preventive Medicine, College of Basic Medical Sciences, Shandong University of Traditional Chinese Medicine, Jinan, People鈥檚 Republic of China3. Shandong Provincial Key Laboratory of Infectious Disease Control and Prevention, Shandong Center for Disease Control and Prevention, Jinan, People鈥檚 Republic of China4. Shandong Center for Disease Control and Prevention, No. 16992 Jingshi Road, Jinan, 250014 People鈥檚 Republic of China5. Jinan Environmental Monitoring Center, Jinan, People鈥檚 Republic of China6. Department of Virology II, National Institute of Infectious Diseases, Tokyo, Japan7. WHO WPRO Regional Polio Reference Laboratory and State Key Laboratory for Molecular Virology and Genetic Engineering, Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People鈥檚 Republic of China8. Linyi Center for Disease Control and Prevention, Linyi, People鈥檚 Republic of China
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Biomedicine
  Medical Microbiology
  Virology
  Plant Sciences
  
• 出版者：Springer Netherlands
• ISSN：1572-994X

文摘

Echovirus 11 (E11) is an important human pathogen, but its genetic information in China is in scarce. In this study, 12 sewage samples from Jinan city and 18 from Linyi city were collected in Shandong Province, China in 2010, and E11 was the predominant serotype with 54 isolates from 16 samples. Numbers of E11 isolates reached peaks in August in both Jinan and Linyi city, while another peak occurred in December in Linyi. The complete VP1 genes of all these isolates were sequenced and phylogenetically compared with clinical isolates from Shandong in 1994–2010 (n = 29) and global E11. Shandong isolates segregated into five clusters, four in genogroup A and one in genogroup C. Environmental isolates belonged to two clusters of genogroup A, with high inter-cluster genetic divergence (18.5–20.9%). No local clinical E11 was isolated in the two cities in 2010, revealing the value of environmental surveillance in investigating circulating viruses. These findings underscored the significance of environmental VP1 sequence divergences in comprehending the local enterovirus circulation, and updated the global molecular epidemiology of E11.