Complete genomic sequence of the Vibrio alginolyticus lytic bacteriophage PVA1
详细信息 查看全文
- 作者：Jiancheng Zhang (1) (2)
Zhenhui Cao (1) (3)
Yongping Xu (1) (2)
Xiaoyu Li (1)
Huaqiang Li (2) (4)
Feifei Wu (2) (4)
Lili Wang (1) (2)
Fang Cao (1)
Zhen Li (1)
Shuying Li (5)
Liji Jin (1) (2) - 刊名：Archives of Virology
- 出版年：2014
- 出版时间：December 2014
- 年：2014
- 卷：159
- 期：12
- 页码：3447-3451
- 全文大小：785 KB
- 参考文献：1. Adams MH (1959) Bacteriophages. Interscience Publishers, New York
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-10. doi:10.1016/S0022-2836(05)80360-2 CrossRef
3. Besemer J, Borodovsky M (2005) GeneMark: Web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res 33:W451–W454. doi:10.1093/nar/gki487 CrossRef
4. Carlson K (2005) Working with bacteriophages: common techniques and methodological approaches. In: Kutter E, Sulakvelidze A (eds) Bacteriophages: biology and application. CRC Press, Boca Raton
5. Delcher AL, Bratke KA, Powers EC, Salzberg SL (2007) Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-79. doi:10.1093/bioinformatics/btm009 CrossRef
6. Fischetti VA (2008) Bacteriophage lysins as effective antibacterials. Curr Opin Microbiol 11:393-00. doi:10.1016/j.mib.2008.09.012 CrossRef
7. Garbe J, Bunk B, Rohde M, Schobert M (2011) Sequencing and characterization of / Pseudomonas aeruginosa phage JG004. BMC Microbiol 11:102. doi:10.1186/1471-2180-11-102 CrossRef
8. Gomez JM, Fajardo R, Pati?o JF, Arias CA (2003) Necrotizing fasciitis due to / Vibrio alginolyticus in an immunocompetent patient. J Clin Microbiol 41:3427-429. doi:10.1128/JCM.41.7.3427-3429.2003 CrossRef
9. González-Escalona N, Blackstone GM, DePaola A (2006) Characterization of a / Vibrio alginolyticus strain, isolated from Alaskan oysters, carrying a hemolysin gene similar to the thermostable direct hemolysin-related hemolysin gene ( / trh) of / Vibrio parahaemolyticus. Appl Environ Microb 72:7925-929. doi:10.1128/AEM.01548-06 CrossRef
10. Horii T, Morita M, Muramatsu H, Monji A, Miyagishima D, Kanno T, Maekawa M (2005) Antibiotic resistance in / Aeromonas hydrophila and / Vibrio alginolyticus isolated from a wound infection: A case report. J Trauma 58:196-00. doi:10.1097/01.TA.0000066381.33339.C0 CrossRef
11. Hornstrup MK, Gahrn-Hansen B (1994) Extraintestinal infections caused by / Vibrio parahaemolyticus and / Vibrio alginolyticus in a Danish county 1987-1992. Ugeskrift Laeger 156:5279. doi:10.3109/00365549309008571
12. Lagesen K, Hallin P, R?dland EA, St?rfeldt H-H, Rognes T, Ussery DW (2007) RNAmmer: Consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35:3100-108. doi:10.1093/nar/gkm160 CrossRef
13. Laslett D, Canback B (2004) ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res 32:11-6. doi:10.1093/nar/gkh152 CrossRef
14. Lee KK, Yu SR, Yang TL, Liu PC, Chen FR (1996) Isolation and characterization of / Vibrio alginolyticus isolated from diseased kuruma prawn, / Penaeus japonicus. Lett Appl Microbiol 22:111-14. doi:10.1111/j.1472-765X.1996.tb01121.x CrossRef
15. Lin YR, Chiu CW, Chang FY, Lin CS (2012) Characterization of a new phage, termed Phi A318, which is specific for / Vibrio alginolyticus. Arch Virol 157:917-26. doi:10.1007/s00705-012-1244-8 Cao (1) (3)
Yongping Xu (1) (2)
Xiaoyu Li (1)
Huaqiang Li (2) (4)
Feifei Wu (2) (4)
Lili Wang (1) (2)
Fang Cao (1)
Zhen Li (1)
Shuying Li (5)
Liji Jin (1) (2)
1. School of Life Science and Biotechnology, Dalian University of Technology, Dalian, 116024, China
2. Ministry of Education Center for Food Safety of Animal Origin, Dalian, 116600, China
3. Faculty of Animal Science and Technology, Yunnan Agricultural University, Kunming, 650201, China
4. Department of Biology and Chemical Engineering, Shaoyang University, Shaoyang, 422100, China
5. Dalian SEM Bio-Engineering Technology Co. Ltd., Dalian, 116620, China - ISSN：1432-8798
文摘
A novel Vibrio alginolyticus lytic bacteriophage was isolated from sewage samples obtained from a local aquatic market. Morphological analysis revealed that the phage, designated as PVA1, belonged to the family Podoviridae. The complete genomic sequence of phage PVA1 contained 41,529?bp with a G?+?C content of 43.7?% and 75 putative open reading frames. The genome was grouped into four modules, including phage structure, DNA packaging, DNA replication and regulation, and some additional functions. Further genomic comparison of the phage PVA1 with other known phages showed no significant similarities. Genes related to virulence and lysogeny were not detected in the phage genome. Our results suggest that phage PVA1 may be classified as a new Vibrio phage. We believe that these phage genomic sequence data will provide useful basic information for further molecular research on this Vibrio phage and its host as well for determining its infection/interaction mechanisms.