Infectious salmon anaemia virus (ISAV) in Chilean Atlantic salmon (Salmo salar) aquaculture: emergence of low pathogenic ISAV-HPR0 and re-emergence of virulent ISAV-HPR? HPR3 and HPR14

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• 作者：Marcos G Godoy (13) (14) (15)
  Molly JT Kibenge (10)
  Rudy Suarez (13) (15)
  Eduardo Lazo (15)
  Alejandro Heisinger (14)
  Javier Aguinaga (15)
  Diego Bravo (15)
  Julio Mendoza (13)
  Katerina O Llegues (13) (15)
  Rubén Avenda?o-Herrera (11) (12)
  Cristian Vera (15)
  Fernando Mardones (15)
  Frederick SB Kibenge (10)
  
• 关键词：Low pathogenic infectious salmon anaemia virus ; ISAV ; HPR0 ; Virulent ISAV ; ISAV ; HPR?/li> Virulence ; Salmo salar
• 刊名：Virology Journal
• 出版年：2013
• 出版时间：December 2013
• 年：2013
• 卷：10
• 期：1
• 全文大小：821 KB
• 参考文献：1. OIE: / Manual of Diagnostic Tests for Aquatic Animals 2012. 2012. http://www.oie.int/en/international-standard-setting/aquatic-manual/access-online/
  2. Kibenge FSB, Godoy MG, Fast M, Workenhe S, Kibenge MJT: Countermeasures against viral diseases of farmed fish. / Antiviral Res 2012, 95:257-81. CrossRef
  3. McCauley JW, Hongo S, Kaverin NV, Kochs G, Lamb RA, / et al.: / Family Orthomyxoviridae. In Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses. Edited by: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ. San Diego, CA: Academic Press; 2011:749-61.
  4. Rimstad E, Mjaaland S, Snow M, Mikalsen AB, Cunningham CO: Characterization of the infectious salmon anemia virus genomic segment that encodes the putative hemagglutinin. / J Virol 2001, 75:5352-356. CrossRef
  5. Kross?y B, Nilsen F, Falk K, Endresen C, Nylund A: Phylogenetic analysis of infectious salmon anaemia virus isolates from Norway, Canada and Scotland. / Dis Aquat Org 2001, 44:1-. CrossRef
  6. Falk K, Aspehaug V, Vlasak R, Endresen C: Identification and characterization of viral structural proteins of infectious salmon anemia virus. / J Virol 2004, 78:3063-071. CrossRef
  7. Aspehaug V, Mikalsen AB, Snow M, Biering E, Villoing S: Characterization of the infectious salmon anemia virus fusion protein. / J Virol 2005, 79:12544-2553. CrossRef
  8. Kibenge FS, Kibenge MJ, Gherardelli V, Mansilla S, Lisperger A, Jarpa M, Larroquete G, Avend?o F, Lara M, Gallardo A, Godoy MG, Wang Y: Infectious salmon anaemia virus (ISAV) isolated from the ISA disease outbreaks in Chile diverged from ISAV isolates from Norway around 1996 and was disseminated around 2005, based on surface glycoprotein gene sequences. / Virology J 2009, 6:88. CrossRef
  9. European Food Safety Authority (EFSA) Panel on Animal Health and Welfare (AHAW): Scientific opinion on infectious salmon anaemia. / EFSA Journal 2012, 10:2971. http://www.efsa.europa.eu/en/efsajournal/pub/2971.htm
  10. Skall HF: Detection of HPR0 in Denmark and criteria for diagnosis of ISA. In / Report on the 15th Annual Meeting of the National Reference Laboratories for Fish Diseases. Copenhagen, Denmark; 2011:48-9. Available online: http://www.crl-fish.eu/upload/sites/eurl-fish/activities/annual_meetings/15_am_report.pdf
  11. McBeath AJA, Bain N, Snow M: Surveillance for infectious salmon anaemia virus HPR0 in marine Atlantic salmon farms across Scotland. / Dis Aquat Org 2009, 87:161-69. CrossRef
  12. Christiansen DH, ?stergaard PS, Snow M, Dale OB, Falk K: A low-pathogenic variant of infectious salmon anemia virus (ISAV-HPR0) is highly prevalent and causes a non-clinical transient infection in farmed Atlantic salmon (Salmo salar L.) in the Faroe islands. / J Gen Virol 2011, 92:909-18. CrossRef
  13. Mjaaland S, Hungnes O, Teig A, Dannevig BH, Thorud K, Rimstad E: Polymorphism in the infectious salmon anaemia virus haemagglutinin gene: importance and possible implications for evolution and ecology of infectious salmon anaemia disease. / Virology 2002, 304:379-91. CrossRef
  14. Cunningham C, Gregory A, Black J, Simpson I, Raynard R: A novel variant of the infectious salmon anaemia virus (ISAV) haemagglutinin gene suggests mechanisms for virus diversity. / Bull Eur Assoc Fish Pathol 2002, 22:366-74.
  15. Cook-Versloot M, Griffiths S, Cusack R, McGeachy S, Ritchie R: Identification and characterization of infectious salmon anemia virus (ISAV) hemagglutinin gene highly polymorphic region (HPR) type 0 in North America. / Bull Eur Assoc Fish Path 2004, 24:203-08.
  16. Nylund A, Plarre H, Hodneland K, Devold M, Aspehaug V, Aarseth M, Koren C, Watanabe K: Haemorrhagic smolt syndrome (HSS) in Norway: pathology and associated virus-like particles. / Dis Aquat Org 2003, 54:15-7. CrossRef
  17. Nylund A, Plarre H, Karlsen M, Fridell F, Otten KF, Baratland A, S?ther PA: Transmission of infectious salmon anaemia virus in farmed populations of Atlantic salmon (Salmo salar). / Arch Virol 2007, 152:151-79. CrossRef
  18. Markussen T, Jonassen CM, Numanovic S, Braaen S, Hjortaas M, Nilsen H, Mjaaland S: Evolutionary mechanisms involved in the virulence of infectious salmon anaemia virus (ISAV), a piscine orthomyxovirus. / Virology 2008, 374:515-27. CrossRef
  19. Lyngstad T, Hjortaas M, Kristoffersen A, Markussen T, Karlsen E, Jonassen C, Jansen P: Use of molecular epidemiology to trace transmission pathways for infectious salmon anaemia virus (ISAV) in Norwegian salmon farming. / Epidemics 2011, 3:1-1. CrossRef
  20. Lyngstad TM, Kristoffersen AB, Hjortaas MJ, Devold M, Aspehaug V, Larssen RB, Jansen PA: Low virulent infectious salmon anaemia virus (ISAV-HPR0) is prevalent and geographically structured in Norwegian salmon farming. / Dis Aquat Org 2012, 101:197-06. CrossRef
  21. Plarre H, Nylund A, Karlsen M, Brevik ?, S?ther PA, Vike S: Evolution of infectious salmon anaemia virus (ISA virus). / Arch Virol 2012, 157:2309-326. CrossRef
  22. Godoy MG, Aedo A, Kibenge MJT, Groman DB, Yason CV, Grothusen H, Lisperguer A, Calbucura M, Avenda?o F, Imilán M, Jarpa M, Kibenge FSB: First detection, isolation and molecular characterization of infectious salmon anaemia virus associated with clinical disease in farmed Atlantic salmon (Salmo salar) in Chile. / BMC Vet Res 2008, 4:28. CrossRef
  23. Vike S, Nylund S, Nylund A: ISA virus in Chile: evidence of vertical transmission. / Arch Virol 2009, 154:1-. CrossRef
  24. Cottet L, Cortez-San Martin M, Tello M, Olivares E, Rivas-Aravena A, Vallejos E, Sandino AM, Spencer E: Bioinformatic analysis of the genome of infectious salmon anemia virus associated with outbreaks with high mortality in Chile. / J Virol 2010, 84:11916-1928. CrossRef
  25. Mardones FO, Perez AM, Valdes-Donoso P, Carpenter TE: Farm-level reproduction number during an epidemic of infectious salmon anemia virus in southern Chile in 2007-009. / Prev Vet Med 2011,2011(102):175-84. CrossRef
  26. Murray AG, Munro LA, Wallace IS, Berx B, Pendrey D, Fraser D, Raynard RS: Epidemiological investigation into the re-emergence and control of an outbreak of infectious salmon anaemia in the Shetland Islands, Scotland. / Dis Aquat Org 2010, 91:189-00. CrossRef
  27. Alvial A, Kibenge F, Forster J, Burgos JM, Ibarra R, St-Hilaire S: / The Recovery of the Chilean salmon industry: The ISA crisis and its consequences and lessons. Global Aquaculture Alliance ISA Report; http://www.gaalliance.org/cmsAdmin/uploads/GAA_ISA-Report.pdf(Published 2012-2-3. Consulted 2013-5-9) (Published 2012-02-23. Consulted 2013-05-09)
  28. Kibenge FSB, Kibenge MJT, Wang Y, Qian B, Hariharan S, McGeachy S: Mapping of putative virulence motifs on infectious salmon anaemia virus surface glycoprotein genes. / J Gen Virol 2007, 88:3100-111. CrossRef
  29. Frank SA: Models of parasite virulence. / Quarterly Rev Biol 1996, 71:37-8. CrossRef
  30. Galvani AP: Epidemiology meets evolutionary ecology. / TRENDS Ecol Evol 2003, 18:132-39. CrossRef
  31. Pulkkinen K, Suomalainen L-R, Read AF, Ebert D, Rintam?ki P, Valtonen ET: Intensive fish farming and the evolution of pathogen virulence: the case of columnaris disease in Finland. / Proc R Soc B 2010, 277:593-00. CrossRef
  32. Sernapesca: / Listado de centros positivos. Programa Anemia Infecciosa del salmón. 2010. http://www.sernapesca.cl/index.php?option=com_content&view=article&id=588&Itemid=695
  33. Evensen O, Thorud KE, Olsen YA: A morphological study of the gross and light microscopic lesions of infectious anaemia in Atlantic salmon Salmo salar . / Res Vet Sci 1991, 51:215-22. 35 CrossRef
  34. Speilberg L, Evensen O, Dannevig BH: A sequential study of the light and electron microscopical liver lesions of infectious anemia in Atlantic salmon Salmo salar L. / Vet Pathol 1995, 32:466-78. CrossRef
  35. Simko E, Brown LL, MacKinnon AM, Byrne PJ, Ostland VE, Ferguson HW: Experimental infection of Atlantic salmon, Salmo salar L., with infectious salmon naemia virus: a histopathological study. / J Fish Dis 2000, 23:27-2. CrossRef
  36. Jones SRM, Groman DB: Cohabitation transmission of infectious salmon anemia virus among freshwater-reared Atlantic salmon. / J Aquat Ani Health 2001, 13:340-46. CrossRef
  37. Moneke E, Groman D, Johnson GR, Wright GM, Stryhn H, Ikede BO, Kibenge FSB: Correlation of virus distribution in tissues with histologic lesions in Atlantic salmon experimentally infected with infectious salmon anaemia virus. / Vet Pathol 2005, 42:338-49. CrossRef
  38. Munir K, Kibenge FSB: Detection of infectious salmon anaemia virus by real-time RT-PCR. / J Virol Methods 2004, 117:37-7. CrossRef
  39. Snow M, McKay P, McBeath AJA, Black J, Doig F, Kerr R, Cunningham CO, Nylund A, Devold M: Development, application and validation of a Taqman? real-time RT-PCR assay for the detection of infectious salmon anaemia virus (ISAV) in Atlantic salmon (Salmo salar). / Dev Biol Standardization 2006, 126:133-45.
  40. Palacios G, Lovoll M, Tengs T, Hornig M, Hutchison S, / et al.: Heart and skeletal muscle inflammation of farmed salmon is associated with infection with a novel reovirus. / PLoS One 2010, 5:e11487. CrossRef
  41. Garver KA, Hawley LM, McClure CA, Schroeder T, Aldous S, Doig F, Snow M, Edes S, Baynes C, Richard J: Development and validation of a reverse transcription quantitative PCR for universal detection of viral hemorrhagic septicemia virus. / Dis Aquat Org 2011, 95:97-12. CrossRef
  42. Holopainen R, Honkanen J, Jensen BB, Ariel E, Tapiovaara H: Quantitation of ranaviruses in cell culture and tissue samples. / J Virol Meth 2011, 171:225-33. CrossRef
  43. Hodneland K, Bratland A, Christie KE, Endresen C, Nylund A: New subtype of almonid alphavirus (SAV), Togaviridae, from Atlantic salmon Salmo salar and rainbow trout Oncorhynchus mykiss in Norway. / Dis Aquat Org 2005, 66:113-20. CrossRef
  44. Corbeil S, McColl KA, Crane MSJ: Development of a TaqMan quantitative PCR assay for the identification of Piscirickettsia salmonis. / Bull Eur Assoc Fish Pathol 2003, 23:95-01.
  45. Kulldorff M, Heffernan R, Hartman J, Assun??o R, Mostashari F: A space-time per-mutation scan statistic for disease outbreak detection. / PLoS Med 2005, 2:216-24. CrossRef
  46. Kulldorff M, Feuer EJ, Miller BA, Freedman LS: Breast cancer clusters in the northeast United States: a geographic analysis. / Am J Epidemiol 1997, 146:161-70. CrossRef
  47. / Software for the spatial, temporal, and space-time scan statistics, SaTScan?v9.1.1released March 9 2011. Available from http://www.satscan.org/
  48. R Development Core Team: / R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2008. ISBN 3-00051-7-, URL http://www.R-project.org
  49. Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Duran C, Field M, Heled J, Kearse M, Markowitz S, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A: / Geneious v6.0.4. 2012. Available from http://www.geneious.com
  50. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. / J Mol Biol 1990, 215:403-10.
  51. Saitou N, Nei M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. / Mol Biol Evol 1987, 4:406-25.
  
• 作者单位：Marcos G Godoy (13) (14) (15)
  Molly JT Kibenge (10)
  Rudy Suarez (13) (15)
  Eduardo Lazo (15)
  Alejandro Heisinger (14)
  Javier Aguinaga (15)
  Diego Bravo (15)
  Julio Mendoza (13)
  Katerina O Llegues (13) (15)
  Rubén Avenda?o-Herrera (11) (12)
  Cristian Vera (15)
  Fernando Mardones (15)
  Frederick SB Kibenge (10)
  
  13. Mainstream Chile S.A, Av. Diego Portales 2000, piso 10 y 11, Puerto Montt, Chile
  14. Multiexport Foods, Calle Chorrillos, Puerto Montt, 1582, Chile
  15. Center for Animal Disease Modeling and Surveillance (CADMS), Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California, Davis, California, 95616, USA
  10. Department of Pathology and Microbiology, Atlantic Veterinary College, University of Prince Edward Island, 550 University Ave, Charlottetown, P.E.I., C1A 4P3, Canada
  11. Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias Biológicas, Universidad Andrés Bello, Vi?a del Mar, Chile
  12. Interdisciplinary Center for Aquaculture Research (INCAR), Víctor Lamas 1290, PO Box 160-C, Concepción, Chile
  
• ISSN：1743-422X