Fine mapping of RBG2, a quantitative trait locus for resistance to Burkholderia glumae, on rice chromosome 1

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• 作者：Ritsuko Mizobuchi (1) <br> Hiroyuki Sato (2) <br> Shuichi Fukuoka (1) <br> Seiya Tsushima (3) <br> Masahiro Yano (4) <br>
• 关键词：Oryza sativa L. ; Disease resistance ; Bacterial grain rot ; QTL ; Linkage analysis ; Panicle blight
• 刊名：Molecular Breeding
• 出版年：2015
• 出版时间：January 2015
• 年：2015
• 卷：35
• 期：1
• 全文大小：314 KB
• 参考文献：1. Chien CC, Chang YC (1987) The susceptibility of rice plants at different growth stages and 21 commercial rice varieties to / Pseudomonas glumae. J Agric Res China 36:302鈥?10 <br> 2. Cottyn B, Cerez MT, VanOutryve MF, Barroga J, Swings J, Mew TW (1996a) Bacterial diseases of rice. 1. Pathogenic bacteria associated with sheath rot complex and grain discoloration of rice in the Philippines. Plant Dis 80:429鈥?37 blank" title="It opens in new window">CrossRef <br> 3. Cottyn B, VanOutryve MF, Cerez MT, DeCleene M, Swings J, Mew TW (1996b) Bacterial diseases of rice. 2. Characterization of pathogenic bacteria associated with sheath rot complex and grain discoloration of rice in the Philippines. Plant Dis 80:438鈥?45 blank" title="It opens in new window">CrossRef <br> 4. Goto K, Ohata K (1956) New bacterial diseases of rice (brown stripe and grain rot). Ann Phytopathol Soc Jpn 21:46鈥?7 <br> 5. Goto T, Watanabe B (1975) Varietal resistance to bacterial grain rot of rice, caused by / Pseudomonas glumae. Proc Assoc Plant Prot Kyushu 21:141鈥?43 (in Japanese) byochu.21.141" target="_blank" title="It opens in new window">CrossRef <br> 6. Goto T, Nishiyama K, Ohata K (1987) Bacteria causing grain rot of rice. Ann Phytopathol Soc Jpn 53:141鈥?49 blank" title="It opens in new window">CrossRef <br> 7. Groth DE, Linscombe SD, Sha X (2007) Registration of two disease-resistant germplasm lines of rice. J Plant Regist 1:63鈥?4. doi:10.3198/jpr2006.10.0677crg blank" title="It opens in new window">CrossRef <br> 8. Ham J et al (2011) Molecular genetic and genomic studies on bacterial panicle blight of rice and its causative agent / Burkholderia glumae. Phytopathology 101:S266鈥揝266 <br> 9. Imbe T, Tsushima S, Nishiyama H (1986) Varietal resistance of rice to bacterial grain rot and screening method. Proc Assoc Plant Prot Kyushu 32:17鈥?9 byochu.32.17" target="_blank" title="It opens in new window">CrossRef <br> 10. IRGSP (2005) The map-based sequence of the rice genome. Nature 436:793鈥?00 blank" title="It opens in new window">CrossRef <br> 11. Jeong Y, Kim J, Kim S, Kang Y, Nagamatsu T, Hwang I (2003) Toxoflavin produced by / Burkholderia glumae causing rice grain rot is responsible for inducing bacterial wilt in many field crops. Plant Dis 87:890鈥?95 blank" title="It opens in new window">CrossRef <br> 12. Kurita T, Tabei H (1967) On the pathogenic bacterium of bacterial grain rot of rice. Ann Phytopathol Soc Jpn 33:111 <br> 13. Lander E, Green P, Abrahamson J, Barlow A, Daley M, Lincoln S, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174鈥?81 blank" title="It opens in new window">CrossRef <br> 14. Luo J, Xie G, Li B, Lihui X (2007) First report of / Burkholderia glumae isolated from symptomless rice seeds in China. Plant Dis 91:1363. doi:10.1094/Pdis-91-10-1363b blank" title="It opens in new window">CrossRef <br> 15. McCouch S, CGSNL (Committee on Gene Symbolization. Nomenclature and Linkage, Rice Genetics Cooperative) (2008) Gene nomenclature system for rice. Rice 1:72鈥?4 blank" title="It opens in new window">CrossRef <br> 16. Mizobuchi R, Sato H, Fukuoka S, Tanabata T, Tsushima S, Imbe T, Yano M (2013a) Mapping a quantitative trait locus for resistance to bacterial grain rot in rice. Rice 6:13. doi:10.1186/1939-8433-6-13 blank" title="It opens in new window">CrossRef <br> 17. Mizobuchi R, Sato H, Fukuoka S, Tsushima S, Imbe T, Yano M (2013b) Identification of / qRBS1, a QTL involved in resistance to bacterial seedling rot in rice. Theor Appl Genet 126:2417鈥?425. doi:10.1007/s00122-013-2145-2 blank" title="It opens in new window">CrossRef <br> 18. Mogi S, Tsushima S (1985) Varietal resistance to bacterial grain rot in rice, caused by / Pseudomonas glumae. Kyushu Agric Res 47:103 <br> 19. Nandakumar R, Rush MC (2008) Analysis of gene expression in Jupiter rice showing partial resistance to rice panicle blight caused by / Burkholderia glumae. Phytopathology 98:S112 <br> 20. Nandakumar R, Bollich P, Groth D, Rush MC (2007a) Confirmation of the partial resistance of Jupiter rice to bacterial panicle blight caused by / Burkholderia glumae through reduced disease and yield loss in inoculated field tests. Phytopathology 97:S82鈥揝83 <br> 21. Nandakumar R, Rush MC, Correa F (2007b) Association of / Burkholderia glumae and / B. gladioli with panicle blight symptoms on rice in Panama. Plant Dis 91:767. doi:10.1094/Pdis-91-6-0767c blank" title="It opens in new window">CrossRef <br> 22. Ohyanagi H et al (2006) The rice annotation project database (RAP-DB): hub for / Oryza sativa ssp / japonica genome information. Nucl Acids Res 34:D741鈥揇744. doi:10.1093/Nar/Gkj094 blank" title="It opens in new window">CrossRef <br> 23. Pinson SRM, Shahjahan AKM, Rush MC, Groth DE (2010) Bacterial panicle blight resistance QTLs in rice and their association with other disease resistance loci and heading date. Crop Sci 50:1287鈥?297. doi:10.2135/cropsci2008.07.0447 blank" title="It opens in new window">CrossRef <br> 24. Prabhu AS, Bedendo IP (1988) Glume blight of rice in Brazil: etiology, varietal reaction and loss estimates. Trop Pest Manag 34:85鈥?8 blank" title="It opens in new window">CrossRef <br> 25. Sayler RJ, Cartwright RD, Yang YN (2006) Genetic characterization and real-time PCR detection of / Burkholderia glumae, a newly emerging bacterial pathogen of rice in the United States. Plant Dis 90:603鈥?10. doi:10.1094/Pd-90-0603 blank" title="It opens in new window">CrossRef <br> 26. Sha X et al (2006) Registration of 鈥楯upiter鈥?rice. Crop Sci 46:1811鈥?812. doi:10.2135/cropsci2005.10-0393 blank" title="It opens in new window">CrossRef <br> 27. Takita T, Imbe T, Nishiyama H, Tsushima S (1988) Resistance to rice bacterial grain rot in indica and upland rice. Kyushu Agric Res 50:28 <br> 28. Trung HM, Van NV, Vien NV, Lam DT, Lien M (1993) Occurrence of rice grain rot disease in Vietnam. Int Rice Res Notes 18:30 <br> 29. Tsushima S (1996) Epidemiology of bacterial grain rot of rice caused by / Pseudomonas glumae. JARQ 30:85鈥?9 <br> 30. Tsushima S, Mogi S, Saito H (1985) Effects of inoculum density, incubation temperature and incubation period on the development of rice bacterial grain rot. Proc Assoc Plant Prot Kyushu 31:11鈥?2 byochu.31.11" target="_blank" title="It opens in new window">CrossRef <br> 31. Uematsu T, Yoshimura D, Nishiyama K, Ibaraki T, Fujii H (1976) Occurrence of bacterial seedling rot in nursery flat, caused by grain rot bacterium / Pseudomonas glumae. Ann Phytopathol Soc Jpn 42:310鈥?12 blank" title="It opens in new window">CrossRef <br> 32. Wang S, Basten C, Zeng Z (2005) Windows QTL cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh. http://statgen.ncsu.edu/qtlcart/WQTLCart.htm <br> 33. Wasano K, Okuda S (1994) Evaluation of resistance of rice cultivars to bacterial grain rot by the syringe inoculation method. Breed Sci 44:1鈥? <br> 34. Yasunaga T, Wada T, Oosata KF, Hamachi Y (2002) Varietal differences in occurrence of bacterial grain rot in rice cultivars with high palatability. Crop Sci Soc Jpn 68:12鈥?4 <br> 35. Zeigler RS, Alvarez E (1989) Grain discoloration of rice caused by / Pseudomonas glumae in Latin America. Plant Dis 73:368 blank" title="It opens in new window">CrossRef <br>
• 作者单位：Ritsuko Mizobuchi (1) <br> Hiroyuki Sato (2) <br> Shuichi Fukuoka (1) <br> Seiya Tsushima (3) <br> Masahiro Yano (4) <br><br>1. National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602, Japan <br> 2. National Agriculture and Food Research Organization, Kyushu Okinawa Agricultural Research Center (NARO/KARC), 496 Izumi, Chikugo, Fukuoka, 833-0041, Japan <br> 3. National Institute of Agro-Environmental Sciences, 3-1-3 Kannondai, Tsukuba, Ibaraki, 305-8604, Japan <br> 4. NARO Institute of Crop Science (NICS), 2-1-18 Kannondai, Tsukuba, Ibaraki, 305-8518, Japan <br>
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences<br>Plant Sciences<br>
• 出版者：Springer Netherlands
• ISSN：1572-9788

文摘

Bacterial grain rot (BGR), caused by the bacterial pathogen Burkholderia glumae, is a destructive disease of rice. At anthesis, rice panicles are attacked by the pathogen, and the infection causes unfilled or aborted grains, reducing grain yield and quality. Thus, increasing the level of BGR resistance is an important objective for rice breeding. A quantitative trait locus (QTL) on rice chromosome 1 that controls BGR resistance was previously detected in backcross inbred lines (BILs) derived from a cross between Kele, a resistant traditional lowland cultivar (indica) that originated in India, and Hitomebore, a susceptible modern lowland cultivar (temperate japonica) from Japan. Further genetic analyses using a BC3b>F6b> population derived from a cross between a resistant BIL (BC2b>F5b>) and Hitomebore confirmed that a QTL for BGR resistance was located on the long arm of chromosome 1. To define more precisely the chromosomal region underlying this QTL, we identified nine BC2b>F6b> plants in which recombination occurred near the QTL. Substitution mapping using homozygous recombinant and nonrecombinant plants demonstrated that the QTL, here designated as Resistance to Burkholderia glumae 2 (RBG2), was located in a 502-kb interval defined by simple sequence repeat markers RM1216 and RM11727.