Molecular characterization of a distinct bipartite Begomovirus species infecting ivy gourd (Coccinia grandis L.) in Tamil Nadu, India

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• 作者：K. Nagendran ; V. K. Satya ; S. Mohankumar ; G. Karthikeyan
• 关键词：Bipartite begomovirus ; Cucurbits virus ; Whitefly ; Rolling circle amplification
• 刊名：Virus Genes
• 出版年：2016
• 出版时间：February 2016
• 年：2016
• 卷：52
• 期：1
• 页码：146-151
• 全文大小：563 KB
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• 作者单位：K. Nagendran (1) (4)
  V. K. Satya (2)
  S. Mohankumar (3)
  G. Karthikeyan (4)
  
  1. Division of Crop Protection, ICAR - Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh, India
  4. Department of Plant Pathology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India
  2. National Pulses Research Centre, Tamil Nadu Agricultural University, Vamban, Tamil Nadu, India
  3. Department of Plant Molecular Biology and Biotechnology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Biomedicine
  Medical Microbiology
  Virology
  Plant Sciences
  
• 出版者：Springer Netherlands
• ISSN：1572-994X

文摘

A distinct bipartite begomovirus was found to be associated with the mosaic disease on ivy gourd (Coccinia grandis L.) in Tamil Nadu, India. The complete DNA A and DNA B components were cloned by rolling circle amplification. Genome organization of this virus is found to be typical of Old World bipartite begomovirus. The association of betasatellite component with this virus is absent. The closest nucleotide identity of 73.4 % was seen with the Loofa yellow mosaic virus (LYMV-[VN]-AF509739) suggesting that it is a new virus species Coccinia mosaic virus (CoMoV-Ivy gourd [TN TDV Coc1]) and distantly related to the other known begomoviruses. The DNA B component shared a maximum identity of 55 % with that of Tomato leaf curl New Delhi virus (ToLCNDV). In the phylogenetic analysis, CoMoV-Ivy gourd form cluster separate from other begomoviruses. Recombination analysis showed that there was no recombination event in the genome. This is the distinct begomovirus infecting ivy gourd. Keywords Bipartite begomovirus Cucurbits virus Whitefly Rolling circle amplification