Micromonospora mangrovi sp. nov., isolated from mangrove soil

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• 作者：Qing-Yi Xie ; Jian Ren ; Lei Li ; Yu Li ; Zi-Xin Deng ; Kui Hong
• 关键词：Micromonospora mangrovi sp. nov. ; Polyphasic taxonomy ; 16S rRNA
• 刊名：Antonie van Leeuwenhoek
• 出版年：2016
• 出版时间：April 2016
• 年：2016
• 卷：109
• 期：4
• 页码：483-491
• 全文大小：490 KB
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• 作者单位：Qing-Yi Xie (1) (2)
  Jian Ren (1)
  Lei Li (1)
  Yu Li (2)
  Zi-Xin Deng (1)
  Kui Hong (1)
  
  1. Key Laboratory of Combinatorial Biosynthesis and Drug Discovery, Ministry of Education, and Wuhan University School of Pharmaceutical Sciences, Wuhan, 430071, People’s Republic of China
  2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture Sciences, Haikou, 571101, People’s Republic of China
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Microbiology
  Medical Microbiology
  Plant Sciences
  Soil Science and Conservation
  
• 出版者：Springer Netherlands
• ISSN：1572-9699

文摘

A novel actinomycete strain 2803GPT1-18T was isolated from a composite mangrove soil sample collected from Beihai, Guangxi province, China. Phylogenetic analysis of the 16S rRNA gene sequence of strain 2803GPT1-18T indicated high similarity with ‘Micromonospora harpali’ NEAU-JC6T (99.2 %), Micromonospora haikouensis 232617T (99.1 %), Micromonospora wenchangensis 2602GPT1-05T (99.1 %), Micromonospora schwarzwaldensis HKI0641T (99.1 %). The gyrB gene sequence analysis also indicated that strain 2803GPT1-18T should be assigned to the genus Micromonospora but different from any established Micromonospora species. The strain harbored meso-DAP and glycine as major cell wall amino acids, MK-10(H₆) (53.5 %), MK-9(H₆) (25.1 %) and MK-9(H₄) (13.4 %) as predominant menaquinones. The characteristic whole cell sugars are arabinose, xylose, glucose, galactose and mannose. The polar lipid profile comprises phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol and unidentified polar lipids. The major cellular fatty acids present are iso-C_16:0 (44.2 %) and iso-C_15:0 (12.4 %). The DNA G+C content is 71.2 mol%. Furthermore, a combination of DNA–DNA relatedness and some physiological and biochemical properties indicated that the novel strain could be readily distinguished from the closely related species. On the basis of these phenotypic and genotypic data, strain 2803GPT1-18T represents a novel species of the genus Micromonospora, for which the name Micromonospora mangrovi sp. nov. is proposed. The type strain is 2803GPT1-18T (=CCTCC AA2012012T = DSM45761T).