Detection and characterization of small insertion and deletion genetic variants in modern layer chicken genomes
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- 作者：Clarissa Boschiero ; Almas A. Gheyas ; Hannah K. Ralph ; Lel Eory ; Bob Paton…
- 关键词：Dindel ; SAMtools ; False discovery rate ; InDel ; Layer chicken ; Loss ; of ; function mutation ; Next generation sequencing
- 刊名：BMC Genomics
- 出版年：2015
- 出版时间：December 2015
- 年：2015
- 卷：16
- 期：1
- 全文大小：2,251 KB
- 刊物主题：Life Sciences, general; Microarrays; Proteomics; Animal Genetics and Genomics; Microbial Genetics and Genomics; Plant Genetics & Genomics;
- 出版者：BioMed Central
- ISSN：1471-2164
文摘
Background Small insertions and deletions (InDels) constitute the second most abundant class of genetic variants and have been found to be associated with many traits and diseases. The present study reports on the detection and characterisation of about 883 K high quality InDels from the whole-genome analysis of several modern layer chicken lines from diverse breeds.