A heuristic for the time constrained asymmetric linear sum assignment problem

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• 作者：Peter Brown ; Yuedong Yang ; Yaoqi Zhou…
• 关键词：Heuristic search ; Optimization ; Linear sum assignment ; Protein structure alignment
• 刊名：Journal of Combinatorial Optimization
• 出版年：2017
• 出版时间：February 2017
• 年：2017
• 卷：33
• 期：2
• 页码：551-566
• 全文大小：
• 刊物类别：Mathematics and Statistics
• 刊物主题：Combinatorics; Convex and Discrete Geometry; Mathematical Modeling and Industrial Mathematics; Theory of Computation; Optimization; Operation Research/Decision Theory;
• 出版者：Springer US
• ISSN：1573-2886
• 卷排序：33

文摘

The linear sum assignment problem is a fundamental combinatorial optimisation problem and can be broadly defined as: given an \(n \times m, m \ge n\) benefit matrix \(B = (b_{ij})\), matching each row to a different column so that the sum of entries at the row-column intersections is maximised. This paper describes the application of a new fast heuristic algorithm, Asymmetric Greedy Search, to the asymmetric version (\(n \ne m\)) of the linear sum assignment problem. Extensive computational experiments, using a range of model graphs demonstrate the effectiveness of the algorithm. The heuristic was also incorporated within an algorithm for the non-sequential protein structure matching problem where non-sequential alignment between two proteins, normally of different numbers of amino acids, needs to be maximised.