Bacterial diversity and distribution in seven different estuarine sediments of Poyang Lake, China
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  • 作者:Ping Sheng ; Yizun Yu ; Guohua Zhang ; Jiangli Huang ; Li He…
  • 关键词:Bacterial diversity ; Bacterial community composition ; Estuarine sediments ; Poyang Lake
  • 刊名:Environmental Earth Sciences
  • 出版年:2016
  • 出版时间:March 2016
  • 年:2016
  • 卷:75
  • 期:6
  • 全文大小:1,046 KB
  • 参考文献:Angeloni NL, Jankowski KJ, Tuchman NC et al (2006) Effects of an invasive cattail species (Typha x glauca) on sediment nitrogen and microbial community composition in a freshwater wetland. FEMS Microbiol Lett 263:86–92CrossRef
    Aspila KI, Agemain H, Chau A (1976) A semi-automated method for the determination of inorganic, organic and total phosphorus in sediments. Analyst 101:187–197CrossRef
    Deng X, Zhao Y, Wu F et al (2011) Analysis of the trade-off between economic growth and the reduction of nitrogen and phosphorus emissions in the Poyang Lake Watershed, China. Ecol Model 222:330–336CrossRef
    Ding K, Wen X, Chen L et al (2014) Abundance and distribution of ammonia-oxidizing archaea in Tibetan and Yunnan plateau agricultural soils of China. Front Env Sci En 8:693–702CrossRef
    Doricha RA, Nelsona DW, Sommers LE (1984) Availability of phosphorus to algae from eroded soil fractions. Agr Ecosyst Environ 11:253–264CrossRef
    Dykhuizen DE (1998) Santa Rosalia revisited: why are there so many species of bacteria? Antonie van Leeuwenhoek 73:25–33CrossRef
    Ebina J, Tsutsui T, Shirai T (1983) Simultaneous determination of total nitrogen and total phosphorus in water using peroxodisulfate oxidation. Water Res 17:1721–1726CrossRef
    Edgar Robert C (2013) UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods 10:996–998CrossRef
    Fang JY, Wang ZH, Zhao SQ et al (2006) Biodiversity changes in the lakes of the Central Yangtze. Front Ecol Environ 4:369–377CrossRef
    Fawcett JK (1954) The semi-micro kjeldahl method for the determination of nitrogen. J Med Lab Technol 01:1–22
    Fierer N, Bradford MA, Jackson RB (2007) Toward an ecological classification of soil bacteria. Ecology 88:1354–1364CrossRef
    Guo H, Hu Q, Jiang T (2008) Annual and seasonal streamflow responses to climate and land-cover changes in the Poyang Lake basin, China. J Hydrol 355:106–122CrossRef
    Haukka K, Kolmonen E, Hyder R et al (2006) Effect of nutrient loading on bacterioplankton community composition in Lake Mesocosms. Microb Ecol 51:137–146CrossRef
    Hietala J, Vakkilainen K, Kairesalo T (2004) Community resistance and change to nutrient enrichment and fish manipulation in a vegetated lake littoral. Freshwat Biol 49:1525–1537CrossRef
    Huang R, Zhao DY, Jiang CL et al (2014) Heterogeneity of bacterial community compositions in surface sediments of three lake zones in lake Taihu. Proc Natl Acad Sci, India, Sect B Biol Sci 85:465–474CrossRef
    Janssen PH (2006) Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microbiol 72:1719–1728CrossRef
    Jin XC, Xu QJ, Huang CZ (2005a) Current status and future tendency of lake eutrophication in China. Sci China C Life Sci 48:948–954
    Jin X, Wang S, Pang Y et al (2005b) The adsorption of phosphate on different trophic lake sediments. Colloid Surface A 254:241–248CrossRef
    Jurgens G, Glöckner FO, Amann R et al (2000) Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiol Ecol 34:45–56
    Kirchman DL (2002) The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39:91–100
    Liang Y, Xiao HY, Liu XZ et al (2015) Spatial and temporal water quality characteristics of Poyang Lake Migratory Bird Sanctuary in China. Chin J Geochem 34:38–46CrossRef
    Magoč T, Salzberg SL (2011) FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27:2957–2963CrossRef
    Martins G, Terada A, Ribeiro DC et al (2011) Structure and activity of lacustrine sediment bacteria involved in nutrient and iron cycles. FEMS Microbiol Ecol 77:666–679CrossRef
    Martiny JB, Bohannan BJ, Brown JH et al (2006) Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol 4:102–112CrossRef
    McLaughlin RW, Wang SB, Zhou W et al (2015) A Comparison of the bacterial diversity of two shallow freshwater lakes in China. Proc Natl Acad Sci, India, Sect B Biol Sci 85:137–146CrossRef
    McTaggart TL, Shapiro N, Woyke T et al (2014) Draft genome of Janthinobacterium sp. RA13 isolated from lake Washington sediment. Genome Announc 3(1):e01588-14CrossRef
    Min Q, Zhan L (2012) Characteristics of low-water changes in Lake Poyang during 1952-2011. J Lake Sci 24:675–678CrossRef
    Mook WT, Chakrabarti MH, Aroua MK et al (2012) Removal of total ammonia nitrogen (TAN), nitrate and total organic carbon (TOC) from aquaculture wastewater using electrochemical technology: a review. Desalination 285:1–13CrossRef
    Ondov BD, Bergman NH, Phillippy AM (2011) Interactive metagenomic visualization in a Web browser. BMC Bioinformatics 12:385CrossRef
    Qu JH, Yuan HL, Wang ET et al (2008) Bacterial diversity in sediments of the eutrophic Guanting Reservoir, China, estimated by analyses of 16S rDNA sequence. Biodivers Conserv 17:1667–1683CrossRef
    Schütz JH, Nuñer APDO (2007) Growth and survival of dorado Salminus brasiliensis (Pisces, Characidae) post-larvae cultivated with different types of food and photoperiods. Braz Arch Biol Technol 50:435–444CrossRef
    Shankman D, Keim BD, Song J (2006) Flood frequency in China’s Poyang Lake region: trends and teleconnections. Int J Climatol 26:1255–1266CrossRef
    Song H, Li Z, Du B et al (2012) Bacterial communities in sediments of the shallow Lake Dongping in China. J Appl Microbiol 112:79–89CrossRef
    Spring S, Schulze R, Overmann J et al (2000) Identification and characterization of ecologically significant prokaryotes in the sediment of freshwater lakes: molecular and cultivation studies. FEMS Microbiol Rev 24:573–590CrossRef
    Stepanauskas R, Moran MA, Bergamaschi BA (2003) Covariance of bacterioplankton composition and environmental variables in a temperate delta system. Aquat Microb Ecol 31:85–98CrossRef
    Tamaki H, Sekiguchi Y, Hanada S et al (2005) Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques. Appl Environ Microbiol 71:2162–2169CrossRef
    Tijdens M, Hoogveld HL, Kamst-van Agterveld MP et al (2008) Population dynamics and diversity of viruses, bacteria and phytoplankton in a shallow eutrophic lake. Microb Ecol 56:29–42CrossRef
    Wang HZ, Xu QQ, Cui YD et al (2007) Macrozoobenthic community of Poyang Lake, the largest freshwater lake of China, in the Yangtze floodplain. Limnology 8:65–71CrossRef
    Wetzel RG (1983) Limnology. Saunders College, New York
    Whitman WB, Coleman DC, Wiebe WJ (1998) Prokaryotes: the unseen majority. Proc Natl Acad Sci USA 95:6578–6583CrossRef
    Wu L, Kellogg L, Devol AH et al (2008) Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico. Appl Environ Microbiol 74:4516–4529CrossRef
    Wu L, Li M, Guo Y et al (2011) Influence of three gorges project on water quality of Poyang Lake. Procedia Environ Sci 10:1496–1501CrossRef
    Wu L, Ge G, Zhu GF et al (2012) Diversity and composition of the bacterial community of Poyang Lake (China) as determined by 16S rRNA gene sequence analysis. World J Microbiol Biotechnol 28:233–244CrossRef
    Yao X, Wang SR, Ni ZK et al (2015) The response of water quality variation in Poyang Lake (Jiangxi, People’s Republic of China) to hydrological changes using historical data and DOM fluorescence. Environ Sci Pollut Res 22:3032–3042CrossRef
    Zeng J, Yang L, Li J et al (2009) Vertical distribution of bacterial community structure in the sediments of two eutrophic lakes revealed by denaturing gradient gel electrophoresis (DGGE) and multivariate analysis techniques. World J Microbiol Biotechnol 25:225–233CrossRef
    Zhang Q, Sun P, Chen X et al (2011) Hydrological extremes in the Poyang Lake basin, China: changing properties, causes and impacts. Hydrol Process 25:3121–3130CrossRef
    Zhang JX, Yang YY, Zhao L et al (2015) Distribution of sediment bacterial and archaeal communities in plateau freshwater lakes. Appl Microbiol Biotechnol 99:3291–3302CrossRef
    Zhao DY, Huang R, Zeng J et al (2012) Diversity analysis of bacterial community compositions in sediments of urban lakes by terminal restriction fragment length polymorphism (T-RFLP). World J Microbiol Biotechnol 28:3159–3170CrossRef
    Zhen L, Li F, Huang H et al (2011) Households’ willingness to reduce pollution threats in the Poyang Lake region, southern China. J Geochem Explor 110:15–22CrossRef
  • 作者单位:Ping Sheng (1)
    Yizun Yu (1)
    Guohua Zhang (1)
    Jiangli Huang (1)
    Li He (1)
    Jiannan Ding (1)

    1. Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang, 330096, China
  • 刊物类别:Earth and Environmental Science
  • 刊物主题:None Assigned
  • 出版者:Springer Berlin Heidelberg
  • ISSN:1866-6299
文摘
In this study, bacterial community compositions in seven different estuarine sediments of Poyang Lake were analyzed using 16S rRNA gene-targeted metagenomic approach. Remarkable differences in the bacterial diversity were observed in these different estuarine sediments. Le, Chang and Rao river samples exhibited the higher bacterial diversity; the Fu river sample showed the less diversity. Bacterial richness and diversity were positively regulated by sediment inorganic phosphorus, and nitrite nitrogen, total phosphorus and inorganic phosphorus were found to be important drivers for bacterial community compositions. Proteobacteria, Acidobacteria, Firmicutes, Chloroflexi, Bacteroidetes, Planctomycetes, Gemmatimonadetes, Actinobacteria, Nitrospirae, and Verrucomicrobia were the major components of sediment bacterial communities. Among them, Proteobacteria was the most dominant phylum, followed by Acidobacteria and Firmicutes. Our study gives a comprehensive insight into the structure of bacterial community of the different estuarine sediments of Poyang Lake, indicating that the environmental factors played a key role in influencing the bacterial community composition in the freshwater ecosystem.

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