Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota

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• 作者：Chun-Hui Yu ; Chung-Kuang Lu ; Huang-Ming Su…
• 关键词：Baeocytous cyanobacterium ; Comparative genomics ; Cyanobiont ; GI1 ; Myxosarcina ; Pleurocapsales ; Terpios hoshinota
• 刊名：Standards in Genomic Sciences
• 出版年：2015
• 出版时间：December 2015
• 年：2015
• 卷：10
• 期：1
• 全文大小：1828KB
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• 作者单位：Chun-Hui Yu (1) (2)
  Chung-Kuang Lu (3) (4)
  Huang-Ming Su (5)
  Tzen-Yuh Chiang (6)
  Chi-Chuan Hwang (2)
  Tsunglin Liu (1)
  Yi-Min Chen (5)
  
  1. Institute of Bioinformatics and Biosignal Transduction, National Cheng Kung University, Tainan, 701, Taiwan
  2. Department of Engineering Science, National Cheng Kung University, Tainan, 701, Taiwan
  3. National Research Institute of Chinese Medicine, Taipei, 112, Taiwan
  4. Department of Life Sciences and Institute of Genome Sciences, School of Life Science, National YangMing University, Taipei, 112, Taiwan
  5. Institute of Biotechnology, National Cheng Kung University, Tainan, 701, Taiwan
  6. Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan
  
• 刊物类别：Microbial Genetics and Genomics; Plant Genetics & Genomics; Animal Genetics and Genomics;
• 刊物主题：Microbial Genetics and Genomics; Plant Genetics & Genomics; Animal Genetics and Genomics;
• 出版者：BioMed Central
• ISSN：1944-3277

文摘

To date, genome sequences (complete or in draft form) from only six baeocytous cyanobacteria in four genera have been reported: Xenococcus, Chroococcidiopsis, Pleurocapsa, and Stanieria. To expand our knowledge on the diversity of baeocytous cyanobacteria, this study sequenced the genome of GI1, which is a Myxosarcina-like baeocytous cyanobacterium. GI1 is of interest not only because of its phylogenetic niche, but also because it is a cyanobiont isolated from the marine cyanobacteriosponge Terpios hoshinota, which has been shown to cause the death of corals. The ~7 Mb draft GI1 genome contains 6,891 protein-coding genes and 62 RNA genes. A comparison of genomes among the sequenced baeocytous cyanobacterial strains revealed the existence or absence of numerous discrete genes involved in nitrogen metabolism. It will be interesting to determine whether these genes are important for cyanobacterial adaptations and interactions between cyanobionts and their marine sponge hosts. Keywords Baeocytous cyanobacterium Comparative genomics Cyanobiont GI1 Myxosarcina Pleurocapsales Terpios hoshinota