Fine mapping of a major quantitative trait locus, qLG-9, that controls seed longevity in rice (Oryza sativa L.)

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• 作者：K. Sasaki (1) (7)
  Y. Takeuchi (2)
  K. Miura (3)
  T. Yamaguchi (5)
  T. Ando (4)
  T. Ebitani (5)
  A. Higashitani (1)
  T. Yamaya (6)
  M. Yano (4) (8)
  T. Sato (1) (9)
  
  1. Graduate School of Life Sciences ; Tohoku University ; 2-1-1 Katahira ; Aoba-ku ; Sendai ; Miyagi ; 980-8577 ; Japan
  7. Institute for Sustainable Agro-ecosystem Services ; Graduate School of Agricultural and Life Sciences ; The University of Tokyo ; 1-1-1 Midoricho ; Nishitokyo ; Tokyo ; 188-0002 ; Japan
  2. National Agriculture and Food Research Organization ; Institute of Crop Science ; 2-1-18 Kannondai ; Tsukuba ; Ibaraki ; 305-8518 ; Japan
  3. Agricultural Research Center ; National Agriculture and Food Research Organization ; 3-1-1 Kannondai ; Tsukuba ; Ibaraki ; 305-8666 ; Japan
  5. Toyama Prefectural Agricultural ; Forestry & Fisheries Research Center ; 1124-1 Yoshioka ; Toyama ; Toyama ; 939-8153 ; Japan
  4. National Institute of Agrobiological Sciences ; 2-1-2 ; Kannondai ; Tsukuba ; Ibaraki ; 305-8602 ; Japan
  6. Graduate School of Agricultural Science ; Tohoku University ; 1-1 Tsutsumidori-Amamiyamachi ; Aoba-ku ; Sendai ; Miyagi ; 981-8555 ; Japan
  8. National Agriculture and Food Research Organization ; Institute of Crop Science ; 2-1-18 Kannondai ; Tsukuba ; 305-8518 ; Japan
  9. Graduate School of Agricultural Science ; Tohoku University ; 1-1 Tsutsumidori-Amamiyamachi ; Aoba-ku ; Sendai ; 981-8555 ; Japan
  
• 刊名：Theoretical and Applied Genetics
• 出版年：2015
• 出版时间：April 2015
• 年：2015
• 卷：128
• 期：4
• 页码：769-778
• 全文大小：410 KB
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• 刊物主题：Plant Breeding/Biotechnology; Plant Genetics & Genomics; Agriculture; Plant Biochemistry; Biochemistry, general; Biotechnology;
• 出版者：Springer Berlin Heidelberg
• ISSN：1432-2242

文摘

Key message We fine-mapped a quantitative trait locus, qLG - 9, for seed longevity detected between Japonica-type and Indica-type cultivars. qLG - 9 was mapped in a 30-kb interval of the Nipponbare genome sequence. Abstract A quantitative trait locus, qLG-9, for seed longevity in rice has previously been detected on chromosome 9 by using backcross inbred lines derived from a cross between Japonica-type (Nipponbare) and Indica-type (Kasalath) cultivars. In the present study, the chromosomal location of qLG-9 was precisely determined by fine-scale mapping. Firstly, allelic difference in qLG-9 was verified by QTL analysis of an F2 population derived from a cross between Nipponbare and NKSL-1, in which a segment of Kasalath chromosome 9 was substituted in Nipponbare genetic background. Then, we selected F2 plants in which recombination had occurred near qLG-9 and performed F3 progeny testing on these plants to determine the genotype classes of qLG-9. Eventually, qLG-9 was mapped in a 30-kb interval (defined by two markers, CAPSb and CHPa12) of the Nipponbare genome sequence. This allowed us to nominate positional candidate genes of qLG-9. Additionally, we developed near-isogenic lines (NIL) for qLG-9 by marker-assisted selection. qLG-9 NIL showed significantly higher seed longevity than isogenic control of Nipponbare. These results will facilitate cloning of the gene(s) underlying qLG-9 as well as marker-assisted transfer of desirable genes for seed longevity improvement in rice.