Discovery of QTL for stay-green and heat-stress in barley (Hordeum vulgare) grown under simulated abiotic stress conditions

详细信息    查看全文

• 作者：Peter W. Gous ; Lee Hickey ; Jack T. Christopher ; Jerome Franckowiak…
• 关键词：Barley ; Hordeum vulgare ; Water ; stress ; Heat ; stress
• 刊名：Euphytica
• 出版年：2016
• 出版时间：January 2016
• 年：2016
• 卷：207
• 期：2
• 页码：305-317
• 全文大小：1,024 KB
• 参考文献：Arifuzzaman M, Sayed MA, Muzammil S, Pillen K (2014) Detection and validation of novel QTL for shoot and root traits in barley (Hordeum vulgare L.). Mol Breed 34(3):1373鈥?387. doi:10.鈥?007/鈥媠11032-014-0122-3 CrossRef
  Arriola KG, Kim SC, Huisden CM, Adesogan AT (2012) Stay-green ranking and maturity of corn hybrids: 1. Effects on dry matter yield, nutritional value, fermentation characteristics, and aerobic stability of silage hybrids in Florida. J Dairy Sci 95(2):964鈥?74. doi:10.鈥?168/鈥媕ds.鈥?011-4524 CrossRef PubMed
  Ashraf M (2010) Inducing drought tolerance in plants: recent advances. Biotechnol Adv 28(1):169鈥?83. doi:10.鈥?016/鈥媕.鈥媌iotechadv.鈥?009.鈥?1.鈥?05 CrossRef PubMed
  Borrell AK, Mullet JE, George-Jaeggli B, Oosterom EJ, Hammer GL, Klein PE, Jordan DR (2010) Drought adaptation of stay-green sorghum is associated with canopy development, leaf anatomy, root growth, and water uptake. J Exp Bot 28:1鈥?3. doi:10.鈥?093/鈥媕xb/鈥媏ru232
  Cakir M, Poulsen D, Galwey NW, Ablett GA, Chalmers KJ, Platz GJ, Park RF, Lance RCM, Panozzo JF, Read BJ, Moddy DB, Barr AR, Johnston P, Li CD, Boyd WJR, Grime CR, Appels R, Jones MGK, Langridge P (2003) Mapping and QTL analysis of the barley population Tallon 脳 Kaputar. Aust J Agric Res 54(12):1155鈥?162. doi:10.鈥?071/鈥婣R02238 CrossRef
  Cattivelli L, Rizza F, Badeck FW, Mazzucotelli E, Mastrangelo AM, Francia E, Mar猫 C (2008) Drought tolerance improvement in crop plants: an integrated view from breeding to genomics. Field Crop Res 105(1鈥?):1鈥?4. doi:10.鈥?016/鈥媕.鈥媐cr.鈥?007.鈥?7.鈥?04 CrossRef
  Chen GX, Krugman T, Fahima T, Chen KG, Hu Y, R枚der M, Nevo E, Korol A (2010) Chromosomal regions controlling seedling drought resistance in Israeli wild barley, Hordeum spontaneum C Koch. Genet Resourc Crop Evol 57(1):85鈥?9. doi:10.鈥?007/鈥媠10722-009-9453-z CrossRef
  Christopher JT, Manschadi AM, Hammer GL, Borrell AK (2008) Developmental and physiological traits associated with high yield and stay-green phenotype in wheat. Aust J Agric Res 59(4):354鈥?64. doi:10.鈥?071/鈥婣R07193 CrossRef
  Collard BCY, Jahufer MZZ, Brouwer JB, Pang ECK (2005) An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts. Euphytica 142(1鈥?):169鈥?96. doi:10.鈥?007/鈥媠10681-005-1681-5 CrossRef
  Collard BCY, Mackill DJ (2008) Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Phil Trans R Soc B 363(1491):557鈥?72. doi:10.鈥?098/鈥媟stb.鈥?007.鈥?170 PubMedCentral CrossRef PubMed
  Coombes NE (2002) The reactive tabu search for efficient correlated experimental designs. Liverpool John Moores University, Liverpool
  Crasta OR, Xu WW, Rosenow DT, Mullet J, Nguyen HT (1999) Mapping of post-flowering drought resistance traits in grain sorghum: association between QTLs influencing premature senescence and maturity. Mol Gen Genet 262(3):579鈥?88. doi:10.鈥?007/鈥媠004380051120 CrossRef PubMed
  Dailey JE, Peterson DE, Osborn TC (1988) Hordein gene expression in a low protein barley cultivar. Plant Physiol 88(2):450鈥?53. doi:10.鈥?104/鈥媝p.鈥?8.鈥?.鈥?50 PubMedCentral CrossRef PubMed
  Demey JR, Vicente-Villard贸n JL, Galindo-Villard贸n MP, Zambrano AY (2008) Identifying molecular markers associated with classification of genotypes by External Logistic Biplots. Bioinformatics 24(24):2832鈥?838. doi:10.鈥?093/鈥媌ioinformatics/鈥媌tn552 CrossRef PubMed
  Diab AA, Teulat-Merah B, This D, Ozturk NZ, Benscher D, Sorrells ME (2004) Identification of drought-inducible genes and differentially expressed sequence tags in barley. Theor Appl Genet 109(7):1417鈥?425. doi:10.鈥?007/鈥媠00122-004-1755-0 CrossRef PubMed
  Eglinton J (2006) Flagship barley (Hordeum vulgare). Plant Breeders Rights. http://鈥媝ericles.鈥媔paustralia.鈥媑ov.鈥媋u/鈥媝br_鈥媎b/鈥媝lant_鈥媎etail.鈥媍fm?鈥婣ID=鈥?0505989
  Fox GP, Panozzo JF, Li CD, Lance RCM, Inkerman PA, Henry RJ (2003) Molecular basis of barley quality. Austr J Agric Res 54(12):1081鈥?101. doi:10.鈥?071/鈥婣R02237 CrossRef
  Franckowiak JD, Horsley RD, Neate SM, Schwarz PB (2007) Registration of 鈥楻awson鈥?barley. J Plant Regist 1:37鈥?8. doi:10.鈥?198/鈥媕pr2006.鈥?0.鈥?664crc CrossRef
  Gabriel KR (1971) The biplot graphical display of matrices with application to principal components analysis. Biometrika 58(3):453鈥?67. doi:10.鈥?093/鈥媌iomet/鈥?8.鈥?.鈥?53 CrossRef
  Gous PW, Hasjim J, Franckowiak J, Fox GP, Gilbert RG (2013) Barley genotype expressing 鈥渟tay-green鈥?like characteristics maintains starch quality of the grain during water stress condition. J Cereal Sci 1(6):414鈥?19. doi:10.鈥?016/鈥媕.鈥媕cs.鈥?013.鈥?8.鈥?02 CrossRef
  Gous PW, Lawson W, Kelly A, Martin A, Fox GP, Sutherland M (2012) QTL associated with barley (Hordeum vulgare) feed quality traits measured through in situ digestion. Euphytica 185(1):37鈥?5. doi:10.鈥?007/鈥媠10681-011-0608-6 CrossRef
  Gregersen PL, Gregersen PL, Holm PB, Krupinska K (2008) Leaf senescence and nutrient remobilisation in barley and wheat. Plant Biol (Stuttg) 10:37. doi:10.鈥?111/鈥媕.鈥?438-8677.鈥?008.鈥?0114.鈥媥 CrossRef
  Guo P, Baum M, Varshney RK, GraneR A, Grando S, Ceccarelli S (2008) QTLs for chlorophyll and chlorophyll fluorescence parameters in barley under post-flowering drought. Euphytica 163(2):203鈥?14. doi:10.鈥?007/鈥媠10681-007-9629-6 CrossRef
  Hamblin J, Stefanova K, Angessa TT (2014) Variation in Chlorophyll Content per Unit Leaf Area in Spring Wheat and Implications for Selection in Segregating Material. PLoS ONE 9(3):e92529. doi:10.鈥?371/鈥媕ournal.鈥媝one.鈥?092529 PubMedCentral CrossRef PubMed
  Harris K, Subudhi PK, Borrell A, Jordan D, Rosenow D, Nguyen H, Klein P, Klein R, Mullet J (2007) Sorghum stay-green QTL individually reduce post-flowering drought-induced leaf senescence. J Exp Bot 58(2):327鈥?38. doi:10.鈥?093/鈥媕xb/鈥媏rl225 CrossRef PubMed
  Hickey LT, Lawson W, Platz GJ, Dieters M, Arief VN, German S, Fletcher S, Park RF, Singh D, Pereyra S, Franckowiak J (2011a) Mapping Rph20: a gene conferring adult plant resistance to Puccinia hordei in barley. Theor Appl Genet 123(1):55鈥?8. doi:10.鈥?007/鈥媠00122-011-1566-z CrossRef PubMed
  Hickey LT, Lawson W, Platz GJ, Dieters M, Arief VN, Germ谩n S, Fletcher S, Park RF, Singh D, Pereyra S, Franckowiak J (2011b) Mapping Rph20: a gene conferring adult plant resistance to Puccinia hordei in barley. Theor Appl Genet 123(1):55鈥?8. doi:10.鈥?007/鈥媠00122-011-1566-z CrossRef PubMed
  Hickey LT, Lawson W, Arief VN, Fox G, Franckowiak J, Dieters MJ (2012) Grain dormancy QTL identified in a doubled haploid barley population derived from two non-dormant parents. Euphytica 188:113鈥?22. doi:10.鈥?007/鈥媠10681-011-0577-9 CrossRef
  Jordan DR, Hunt CH, Cruickshank AW, Borrell AK, Henzell RG (2012) The relationship between the stay-green trait and grain yield in elite sorghum hybrids grown in a range of environments. Crop Sci 52(3):1153鈥?161. doi:10.鈥?135/鈥媍ropsci2011.鈥?6.鈥?326 CrossRef
  Joshi AK, Kumari M, Singh VP, Reddy CM, Kumar S, Rane J, Chand R (2007) Stay green trait: variation, inheritance and its association with spot blotch resistance in spring wheat (Triticum aestivum L.). Euphytica 153(1鈥?):59鈥?1. doi:10.鈥?007/鈥媠10681-006-9235-z
  Li JH, Vasanthan T, Rossnagel B, Hoover R (2001) Starch from hull-less barley: I. Granule morphology, composition and amylopectin structure. Food Chem 74(4):395鈥?05CrossRef
  Ling Q, Huang W, Jarvis P (2011) Use of a SPAD-502 meter to measure leaf chlorophyll concentration in Arabidopsis thaliana. Photosynth Res 107(2):209鈥?14. doi:10.鈥?007/鈥媠11120-010-9606-0 CrossRef PubMed
  Mace E, Rami J, Bouchet S, Klein P, Klein R, Kilian A, Wenzl P, Xia L, Halloran K, Jordan D (2009) A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers. BMC Plant Biol 9(1):13PubMedCentral CrossRef PubMed
  Netto AL, Campostrini E, Goncalves de Oliveira J, Bressan-Smith RE (2004) Photosynthetic pigments, nitrogen, chlorophyll 伪 fluorescence and SPAD-502 readings in coffee leaves. Sci Hortic-Amsterdam 104(2005):199鈥?09. doi:10.鈥?016/鈥媕.鈥媠cienta.鈥?004.鈥?8.鈥?13
  Phuong N, Afolayan G, El Soda M, St眉tzel H, Wenzel W, Uptmoor R (2014) Genetic dissection of pre-flowering growth and development in sorghum bicolor l. moench under well-watered and drought stress conditions. Agric Sci 5(11):923鈥?34. doi:10.鈥?236/鈥媋s.鈥?014.鈥?11100
  Rollins JA, Drosse B, Mulki MA, Grando S, Baum M, Singh M, Ceccarelli S, Mv Korff (2013) Variation at the vernalisation genes Vrn H1 and Vrn H2 determines growth and yield stability in barley (Hordeum vulgare) grown under dryland conditions in Syria. Theor Appl Genet 126(11):2803鈥?824. doi:10.鈥?007/鈥媠00122-013-2173-y CrossRef PubMed
  Rong-hua L, Pei-guo G, Baum M, Grando S, Ceccarelli S (2006) Evaluation of chlorophyll content and fluorescence parameters as indicators of drought tolerance in Barley. Agric Sci China 5(10):751鈥?57. doi:10.鈥?016/鈥婼1671-2927(06)60120-X CrossRef
  Rong H, Tang Y, Zhang H, Wua P, Chen Y, Li M, Wua G, Jiang H (2013) The Stay-Green Rice like (SGRL) gene regulates chlorophyll degradation in rice. J Plant Physiol 170(15):1367鈥?373. doi:10.鈥?016/鈥媕.鈥媕plph.鈥?013.鈥?5.鈥?16 CrossRef PubMed
  Siahsar BA, Narouei M (2010) Mapping QTLs of physiological traits associated with salt tolerance in 鈥楽teptoe鈥檟鈥橫orex鈥?doubled haploid lines of barley at seedling stage. J Food Agric Environ 8:751鈥?59
  Spano G, Fonzo ND, Perrotta C, Platani C, Ronga G, Lawlor DW, Napier JA, Shewry PR (2003) Physiological characterization of `stay green鈥?mutants in durum wheat. J Exp Bot 54(386):1415鈥?420. doi:10.鈥?093/鈥媕xb/鈥媏rg150 CrossRef PubMed
  Tao YZ, Henzell RG, Jordan DR, Butler DG, Kelly AM, McIntyre CL (1999) Identification of genomic regions associated with stay green in sorghum by testing RILs in multiple environments. Theor Appl Genet 100(8):1225鈥?232. doi:10.鈥?007/鈥媠001220051428 CrossRef
  Teulat B, Borries C, This D (2001) New QTLs identified for plant water status, water-soluble carbohydrate and osmotic adjustment in a barley population grown in a growth-chamber under two water regimes. Theor Appl Genet 103(1):161鈥?70. doi:10.鈥?007/鈥媠001220000503 CrossRef
  Thomas H, Howarth CJ (2000) Five ways to stay green. J Exp Bot 51(suppl 1):329鈥?37. doi:10.鈥?093/鈥媕exbot/鈥?1.鈥媠uppl_鈥?.鈥?29 CrossRef PubMed
  Vaezi B, Bavei V, Shiran B (2010) Screening of barley genotypes for drought tolerance by agro-physiological traits in field condition. Afr J Agric Res 5(9):881鈥?92. doi:10.鈥?897/鈥婣JAR09.鈥?94
  Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93(1):77鈥?8. doi:10.鈥?093/鈥媕hered/鈥?3.鈥?.鈥?7 CrossRef PubMed
  Wang S, Basten CJ, Zeng ZB (2002) Windows QTL Cartographer: WinQtlCart V2.0
  Wenzl P, Li H, Carling J, Zhou M, Raman H, Paul E, Hearnden P, Maier C, Xia L, Caig V, Ovesn谩 J, Cakir M, Poulsen D, Wang J, Raman R, Smith KP, Muehlbauer GJ, Chalmers KJ, Kleinhofs A, Huttner E, Kilian A (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits. BMC Genom 7(206):1鈥?2. doi:10.鈥?186/鈥?471-2164-7-206
  Xue D-W, Chen M-C, Zhou M-X, Chen S, Mao Y, Zhang G-P (2008) QTL analysis of flag leaf in barley (Hordeum vulgare L.) for morphological traits and chlorophyll content. J Zhejiang Univ Sci B 9(12):938鈥?43. doi:10.鈥?631/鈥媕zus.鈥婤0820105 PubMedCentral CrossRef PubMed
  Yang J, Hu C, Hu H, Yu R, Xia Z, Ye X, Zhu J (2008) QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations. Bioinformatics 24(5):721鈥?23. doi:10.鈥?093/鈥媌ioinformatics/鈥媌tm494 CrossRef PubMed
  Yang J, Zhu J, Williams RW (2007) Mapping the genetic architecture of complex traits in experimental populations. Bioinformatics 23(12):1527鈥?537. doi:10.鈥?093/鈥媌ioinformatics/鈥媌tm143 CrossRef PubMed
  Zadoks JC, Chang TT, Konzak CF (1974) A decimal code for the growth stages of cereals. Weed Res 14(6):415鈥?21. doi:10.鈥?111/鈥媕.鈥?365-3180.鈥?974.鈥媡b01084.鈥媥 CrossRef
  
• 作者单位：Peter W. Gous (1)
  Lee Hickey (1)
  Jack T. Christopher (2)
  Jerome Franckowiak (3) (4)
  Glen P. Fox (1)
  
  1. Queensland Alliance for Agriculture and Food Sciences, The University of Queenslan, St Lucia, QLD, 4072, Australia
  2. Queensland Alliance for Agriculture and Food Sciences, Leslie Research Facility, The University of Queensland, Toowoomba, QLD, 4350, Australia
  3. Department of Agriculture, Fisheries and Forestry, Hermitage Research Facility, Warwick, QLD, 4370, Australia
  4. Department of Agronomy and Plant Genetics, University of Minnesota Twin Cities, St Paul, MN, 55108, USA
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Plant Physiology
  Plant Sciences
  Ecology
  
• 出版者：Springer Netherlands
• ISSN：1573-5060

文摘

This study maps genomic regions associated with terminal heat- and drought-stress tolerance in barley (Hordeum vulgare L.). One hundred lines were randomly sampled from a ND24260 脳 Flagship doubled haploid population and evaluated for stay-green (SG) expression. SG expression including that of parental controls and commercial check varieties was evaluated in two controlled environments; one simulating terminal heat-stress, the other terminal water-stress. During grain-fill the greenness of the spikes (S), flag leaf (FL) and the first leaf under the flag leaf (FL-1) were phenotyped; visually (using a 0鈥? scale) and via single-photon avalanche diode measurements. From the visual assessments, the green leaf area of the plant was determined, by using the difference in green area of the S and FL. Composite interval mapping detected 10 quantitative trait loci (QTL) for SG, positioned on chromosomes 3H, 4H, 5H, 6H and 7H; six of which were associated with terminal heat-stress and four with terminal water-stress. None were co-located with previously reported barley stress-response QTL and thus represent novel barley QTL. Although novel, some SG QTL mapped near chromosomal regions previously reported; such as the two heat-stress QTL mapped to bPb-5529 on 5H, adjacent to QTL reported for root length and root-shoot ratio. Detection of SG QTL in barley grown under simulated heat- and water-stressed conditions offers the potential of high through put screening for these traits. If confirmed in field trials, these genomic regions will be candidates for barley breeding programs targeting improved abiotic stress tolerance via marker-assisted selection. Keywords Barley Hordeum vulgare Water-stress Heat-stress