Molecular characterizations of two grapevine rupestris stem pitting-associated virus isolates from China

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• 作者：Guo-Jun Hu ; Ya-Feng Dong ; Hong-Juan Zhu ; Zun-Ping Zhang…
• 刊名：Archives of Virology
• 出版年：2015
• 出版时间：October 2015
• 年：2015
• 卷：160
• 期：10
• 页码：2641-2645
• 全文大小：562 KB
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• 作者单位：Guo-Jun Hu (1)
  Ya-Feng Dong (1)
  Hong-Juan Zhu (1)
  Zun-Ping Zhang (1)
  Xu-Dong Fan (1)
  Fang Ren (1)
  Jun Zhou (1)
  
  1. National Center for Eliminating Viruses from Deciduous Fruit Trees, Research Institute of Pomology, Chinese Academy of Agricultural Sciences, Xingcheng, 125100, People’s Republic of China
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Biomedicine
  Virology
  Medical Microbiology
  Infectious Diseases
  
• 出版者：Springer Wien
• ISSN：1432-8798

文摘

The complete nucleotide sequences of two isolates of grapevine rupestris stem pitting-associated virus (LSL and JF) collected from grapevine of Xingcheng in Liaoning Province, China, were determined. The genomes of both LSL and JF were found to contain five open reading frames (ORFs). Sequence alignments showed that the genomic sequences of JF were 76.1 %-83.5 % identical to the other ten GRSPaV isolates that have been reported previously and that the nucleotide sequence identity of isolate LSL to other isolates was no more than 78 %. Phylogenetic analysis based on the complete genome sequence indicated that JF belongs to group III and that LSL belongs to a new group (group IV). The average genetic distances of the new genetic lineage from groups I, II and III were 0.34, 0.32 and 0.33, respectively. Electronic supplementary materialThe online version of this article (doi:10.-007/?s00705-015-2544-6) contains supplementary material, which is available to authorized users.