DNA nanotechnology: a future perspective
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  • 作者:Muniza Zahid (1)
    Byeonghoon Kim (2)
    Rafaqat Hussain (3)
    Rashid Amin (1)
    Sung Ha Park (2)
  • 关键词:DNA ; Nanotechnology ; Biomedicine ; Nanoelectronics ; Nanosensors ; DNA computation
  • 刊名:Nanoscale Research Letters
  • 出版年:2013
  • 出版时间:December 2013
  • 年:2013
  • 卷:8
  • 期:1
  • 全文大小:1106KB
  • 参考文献:1. Sekhon BS: Nanobiotechnology: an overview of drug discovery, delivery and development. / Pharmacol Ther 2005, 69:13.
    2. Seeman NC: Nanomaterials based on DNA. / Annu Rev Biochem 2010, 79:65鈥?7. CrossRef
    3. ACS: Redefining DNA: Darwin from the atom up . In / American Chemical Society's 237th National Meeting: March 22鈥?9 2009; Salt Lake City. Edited by: Bernstein M. Washington DC: ACS; 2009:237.
    4. Kallenbach NR, Ma RI, Seeman NC: An immobile nucleic acid junction constructed from oligonucleotides. / Nature 1983,305(5937):829鈥?31. CrossRef
    5. Pinheiro AV, Han D, Shih WM, Yan H: Challenges and opportunities for structural DNA nanotechnology. / Nat Nanotechnol 2011,6(12):763鈥?72. CrossRef
    6. Aldaye FA, Palmer AL, Sleiman HF: Assembling materials with DNA as the guide. / Science 2008,321(5897):1795鈥?799. CrossRef
    7. Shih WM, Lin C: Knitting complex weaves with DNA origami. / Curr Opin Struct Biol 2010,20(3):276鈥?82. CrossRef
    8. Seeman NC: Nucleic acid junctions and lattices. / J Theor Biol 1982,99(2):237鈥?47. CrossRef
    9. Seeman NC: DNA in a material world. / Nature 2003,421(6921):427鈥?31. CrossRef
    10. Yurke B, Turberfield AJ, Mills AP, Simmel FC, Neumann JL: A DNA-fuelled molecular machine made of DNA. / Nature 2000,406(6796):605鈥?08. CrossRef
    11. Mao C, Sun W, Shen Z, Seeman NC: A nanomechanical device based on the B-Z transition of DNA. / Nature 1999,397(6715):144鈥?46. CrossRef
    12. Kay ER, Leigh DA, Zerbetto F: Synthetic molecular motors and mechanical machines. / Angew Chem Int Ed 2007,46(1鈥?):72鈥?91. CrossRef
    13. Keller S, Marx A: The use of enzymes for construction of DNA-based objects and assemblies. / Chem Inform 2012,40(12):5690鈥?697.
    14. Hemminga MA, Vos WL, Nazarov PV, Koehorst RB, Wolfs CJ, Spruijt RB, Stopar D: Viruses: incredible nanomachines. New advances with filamentous phages. / Eur Biophys J 2010,39(4):541鈥?50. CrossRef
    15. Park SH, Yin P, Liu Y, Reif JH, LaBean TH, Yan H: Programmable DNA self-assemblies for nanoscale organization of ligands and proteins. / Nano Lett 2005,5(4):729鈥?33. CrossRef
    16. Lund K, Liu Y, Lindsay S, Yan H: Self-assembling a molecular pegboard. / J Am Chem Soc 2005,127(50):17606鈥?7607. CrossRef
    17. Liu Y, Lin C, Li H, Yan H: Aptamer-directed self-assembly of protein arrays on a DNA nanostructure. / Angewandte Chemie 2005,117(28):4407鈥?412. CrossRef
    18. Li H, LaBean TH, Kenan DJ: Single-chain antibodies against DNA aptamers for use as adapter molecules on DNA tile arrays in nanoscale materials organization. / Org Biomol Chem 2006,4(18):3420鈥?426. CrossRef
    19. Erben CM, Goodman RP, Turberfield AJ: Single鈥恗olecule protein encapsulation in a rigid DNA cage. / Angewandte Chemie 2006,118(44):7574鈥?577. CrossRef
    20. Chhabra R, Sharma J, Ke Y, Liu Y, Rinker S, Lindsay S, Yan H: Spatially addressable multiprotein nanoarrays templated by aptamer-tagged DNA nanoarchitectures. / J Am Chem Soc 2007,129(34):10304鈥?0305. CrossRef
    21. Sacc脿 B, Meyer R, Erkelenz M, Kiko K, Arndt A, Schroeder H, Rabe KS, Niemeyer CM: Orthogonal protein decoration of DNA origami. / Angew Chem Int Ed 2010,49(49):9378鈥?383. CrossRef
    22. Williams BAR, Lund K, Liu Y, Yan H, Chaput JC: Self-assembled peptide nanoarrays: an approach to studying protein鈥損rotein interactions. / Angewandte Chemie 2007,119(17):3111鈥?114. CrossRef
    23. Stephanopoulos N, Liu M, Tong GJ, Li Z, Liu Y, Yan H, Francis MB: Immobilization and one-dimensional arrangement of virus capsids with nanoscale precision using DNA origami. / Nano Lett 2010,10(7):2714鈥?720. CrossRef
    24. S枚nnichsen C, Reinhard BM, Liphardt J, Alivisatos AP: A molecular ruler based on plasmon coupling of single gold and silver nanoparticles. / Nat Biotechnol 2005,23(6):741鈥?45. CrossRef
    25. Rothemund PWK: Folding DNA to create nanoscale shapes and patterns. / Nature 2006,440(7082):297鈥?02. CrossRef
    26. Wei B, Dai M, Yin P: Complex shapes self-assembled from single-stranded DNA tiles. / Nature 2012,485(7400):623鈥?26. CrossRef
    27. Reichert JM, Wenger JB: Development trends for new cancer therapeutics and vaccines. / Drug Discov Today 2008,13(1鈥?):30鈥?7. CrossRef
    28. Bharali DJ, Khalil M, Gurbuz M, Simone TM, Mousa SA: Nanoparticles and cancer therapy: A concise review with emphasis on dendrimers. / Int J Nanomedicine 2009, 4:1. CrossRef
    29. Sparreboom A, Scripture CD, Trieu V, Williams PJ, De T, Yang A, Beals B, Figg WD, Hawkins M, Desai N: Comparative preclinical and clinical pharmacokinetics of a cremophor-free, nanoparticle albumin-bound paclitaxel (ABI-007) and paclitaxel formulated in Cremophor (Taxol). / Clin Cancer Res 2005,11(11):4136鈥?143. CrossRef
    30. Acharya S, Dilnawaz F, Sahoo SK: Targeted epidermal growth factor receptor nanoparticle bioconjugates for breast cancer therapy. / Biomaterials 2009,30(29):5737鈥?750. CrossRef
    31. Johnson JE: Virus particle maturation: insights into elegantly programmed nanomachines. / Curr Opin Struct Biol 2010,20(2):210鈥?16. CrossRef
    32. Merzlyak A, Lee S-W: Phage as templates for hybrid materials and mediators for nanomaterial synthesis. / Curr Opin Chem Biol 2006,10(3):246鈥?52. CrossRef
    33. Glotzer SC, Solomon MJ: Anisotropy of building blocks and their assembly into complex structures. / Nat Mater 2007,6(8):557鈥?62. CrossRef
    34. Yan Lee P, Wong KY: Nanomedicine: a new frontier in cancer therapeutics. / Curr Drug Deliv 2011,8(3):245鈥?53. CrossRef
    35. Zou W: Immunosuppressive networks in the tumour environment and their therapeutic relevance. / Nat Rev Cancer 2005,5(4):263鈥?74. CrossRef
    36. Capini C, Jaturanpinyo M, Chang HI, Mutalik S, McNally A, Street S, Steptoe R, O'Sullivan B, Davies N, Thomas R: Antigen-specific suppression of inflammatory arthritis using liposomes. / J Immunol 2009,182(6):3556鈥?565. CrossRef
    37. Bohunicky B, Mousa SA: Biosensors: the new wave in cancer diagnosis. / Nanotechnology, Science and Applications 2011, 4:1鈥?0.
    38. Sanvicens N, Mannelli I, Salvador J, Valera E, Marco M: Biosensors for pharmaceuticals based on novel technology. / Trends Anal Chem 2011, 30:541鈥?53. CrossRef
    39. Killard AJ, Deasy B, O'Kennedy R, Smyth MR: Antibodies: production, functions and applications in biosensors. / Trends Anal Chem 1995,14(6):257鈥?66. CrossRef
    40. Ezzati Nazhad Dolatabadi J, Omidi Y, Losic D: Carbon nanotubes as an advanced drug and gene delivery nanosystem. / Curr Nanosci 2011,7(3):297鈥?14. CrossRef
    41. Shapira A, Livney YD, Broxterman HJ, Assaraf YG: Nanomedicine for targeted cancer therapy: towards the overcoming of drug resistance. / Drug Resist Updat 2011,14(3):150鈥?63. CrossRef
    42. Amin R, Kulkarni A, Kim T, Park SH: DNA thin film coated optical fiber biosensor. / Curr Appl Phys 2011,12(3):841鈥?45. CrossRef
    43. Sartor V, Djakovitch L, Fillaut JL, Moulines F, Neveu F, Marvaud V, Guittard J, Blais JC, Astruc D: Organoiron route to a new dendron for fast dendritic syntheses using divergent and convergent methods. / J Am Chem Soc 1999,121(12):2929鈥?930. CrossRef
    44. Agrawal A, Min DH, Singh N, Zhu H, Birjiniuk A, Von Maltzahn G, Harris TJ, Xing D, Woolfenden SD, Sharp PA, Charest A, Bhatia S: Functional delivery of siRNA in mice using dendriworms. / ACS Nano 2009,3(9):2495鈥?504. CrossRef
    45. Wilner OI, Weizmann Y, Gill R, Lioubashevski O, Freeman R, Willner I: Enzyme cascades activated on topologically programmed DNA scaffolds. / Nat Nanotechnol 2009,4(4):249鈥?54. CrossRef
    46. Wadia P, Kholkute S, Nandedkar T: Antifertility effect of an octapeptide, a fragment of FSH binding inhibitor, in the common marmoset ( Callithrix jacchus ). / Contraception 2003,67(2):151鈥?60. CrossRef
    47. Nandedkar T, Shahid JK, Kholkute SD, Darpe MB, Moodbidri SB: Interference with ovulation and luteal function by human ovarian follicular fluid peptide in bonnet monkeys, Macaca radiata . / Contraception 1992,45(4):379鈥?85. CrossRef
    48. Adleman LM: Molecular computation of solutions to combinatorial problems. / Science 1994,266(5187):1021鈥?024. CrossRef
    49. Roweis S, Winfree E, Burgoyne R, Chelyapov NV, Goodman MF, Rothemund PW, Adleman LM: A sticker-based model for DNA computation. / J Comput Biol 1998,5(4):615鈥?29. CrossRef
    50. Qian L, Winfree E: A simple DNA gate motif for synthesizing large-scale circuits. / DNA Comput 2009, 5347:70鈥?9. CrossRef
    51. Qian L, Winfree E, Bruck J: Neural network computation with DNA strand displacement cascades. / Nature 2011,475(7356):368鈥?72. CrossRef
    52. Taghipour H, Taghipour A, Rezaei M, Esmaili H: Solving the independent set problem by sticker based DNA computers. / Am J Mol Biol 2012,2(2):153鈥?58. CrossRef
    53. Faulhammer D, Cukras AR, Lipton RJ, Landweber LF: Molecular computation: RNA solutions to chess problems. / Proc Natl Acad Sci 2000,97(4):1385鈥?389. CrossRef
    54. Bandyopadhyay A, Pati R, Sahu S, Peper F, Fujita D: Massively parallel computing on an organic molecular layer. / Nat Phys 2010,6(5):369鈥?75. CrossRef
    55. Liu Q, Wang L, Frutos AG, Condon AE, Corn RM, Smith LM: DNA computing on surfaces. / Nature 2000,403(6766):175鈥?79. CrossRef
    56. Petty MC, Bryce MR, Bloor D: / An Introduction to Molecular Electronics. 1st edition. London: Oxford University Press; 1995.
    57. Baker RJ: / CMOS: Circuit Design, Layout, and Simulation. 2nd edition. New York: Wiley; 2008. CrossRef
    58. Patwardhan JP, Dwyer C, Lebeck AR, Sorin DJ: Circuit and system architecture for DNA-guided self-assembly of nanoelectronics. In / Foundations of Nanoscience: Self-Assembled Architectures and Devices. Edited by: Kyoto RJ. Science Technica, Inc; 2004:344鈥?58.
    59. Bachtold A, Hadley P, Nakanishi T, Dekker C: Logic circuits with carbon nanotube transistors. / Science 2001,294(5545):1317鈥?320. CrossRef
    60. DeHon A: Array-based architecture for FET-based, nanoscale electronics. / IEEE Trans Nanotechnol 2003,2(1):23鈥?2. CrossRef
    61. Guan J, Lee LJ: Generating highly ordered DNA nanostrand arrays. / Proc Natl Acad Sci USA 2005,102(51):18321鈥?8325. CrossRef
    62. Lee JS, Latimer LJP, Reid RS: A cooperative conformational change in duplex DNA induced by Zn2+ and other divalent metal ions. / Biochem Cell Biol 1993,71(3鈥?):162鈥?68. CrossRef
    63. Aich P, Labiuk SL, Tari LW, Delbaere LJ, Roesler WJ, Falk KJ, Steer RP, Lee JS: M-DNA: a complex between divalent metal ions and DNA which behaves as a molecular wire. / J Mol Biol 1999,294(2):477. CrossRef
    64. MacKenzie R, Auzelyte V, Olliges S, Spolenak R, Solak HH, V枚r枚s J: Nanowire development and characterization for applications in biosensing. In / Nanosystems Design and Technology. Edited by: DeMicheli G, Leblebici Y, Gijs M, V枚r枚s J. New York: Springer; 2009:143鈥?73. CrossRef
    65. Fink HW, Sch枚nenberger C: Electrical conduction through DNA molecules. / Nature 1999,398(6726):407鈥?10. CrossRef
    66. Porath D, Bezryadin A, De Vries S, Dekker C: Direct measurements of electrical transport through DNA molecules. / AIP Conference Proceedings 2000, 544:452. CrossRef
    67. Ben-Jacob E, Hermon Z, Caspi S: DNA transistor and quantum bit element: Realization of nano-biomolecular logical devices. / Phys Lett A 1999,263(3):199鈥?02. CrossRef
    68. Lewis FD, Wu T, Zhang Y, Letsinger RL, Greenfield SR, Wasielewski MR: Distance-dependent electron transfer in DNA hairpins. / Science 1997,277(5326):673鈥?76. CrossRef
    69. Kelley SO, Barton JK: Electron transfer between bases in double helical DNA. / Science 1999,283(5400):375鈥?81. CrossRef
    70. Ye Y, Chen L, Liu X, Krull UJ: DNA and microfluidics: building molecular electronics systems. / Anal Chim Acta 2006,568(1):138鈥?45. CrossRef
    71. Watanabe H, Shimotani K, Shigematu T, Manabe C: Electric measurements of nano-scaled devices. / Thin Solid Films 2003, 438:462鈥?66. CrossRef
    72. Amman M, Ben-Jacob E, Mullen K: Charge solitons in 1-D array of mesoscopic tunnel junctions. / Phys Lett A 1989,142(6):431鈥?37. CrossRef
    73. Gupta RK, Saraf V: Nanoelectronics: tunneling current in DNA鈥搒ingle electron transistor. / Curr Appl Phys 2009,9(1):S149-S152. CrossRef
    74. Wikipedia: / Akane, Phosphodiester Bond of DNA. San Francisco; 2008.
    75. Yan H, Zhang X, Shen Z, Seeman NC: A robust DNA mechanical device controlled by hybridization topology. / Nature 2002,415(6867):62鈥?5. CrossRef
    76. Joyce DM, Venkat N, Ouchen F, Singh KM, Smith SR: / Grote JG. MRS Proceedings: DNA-Based hybrids for energy storage applications; 2012.
    77. Nakamura K, Ishikawa T, Nishioka D, Ushikubo T, Kobayashi N: Color-tunable multilayer organic light emitting diode composed of DNA complex and tris (8-hydroxyquinolinato) aluminum. / Appl Phys Lett 2010,97(19):193301鈥?-193301鈥?. CrossRef
    78. Wang G, Tanaka A, Matsuo Y, Niikura K, Ijiro K: DNA-templated self-assembly of conductive nanowires. In / Design for Innovative Value Towards a Sustainable Society. Edited by: Matsumoto M, Umeda Y, Masui K, Fukushige S. New York: Springer; 2012:911鈥?14. CrossRef
    79. Li Y, Kaneko T, Hatakeyama R: Formation of quantum dots in single stranded DNA-wrapped single-walled carbon nanotubes. / Appl Phys Lett 2010,96(2):023104鈥?-023104鈥?.
    80. Park SJ, Taton TA, Mirkin CA: Array-based electrical detection of DNA with nanoparticle probes. / Science 2002,295(5559):1503鈥?506.
    81. Cai H, Cao X, Jiang Y, He P, Fang Y: Carbon nanotube-enhanced electrochemical DNA biosensor for DNA hybridization detection. / Anal Bioanal Chem 2003,375(2):287鈥?93.
    82. Patolsky F, Timko BP, Yu G, Fang Y, Greytak AB, Zheng G, Lieber CM: Detection, stimulation, and inhibition of neuronal signals with high-density nanowire transistor arrays. / Science 2006,313(5790):1100鈥?104. CrossRef
    83. Cai H, Xu C, He P, Fang Y: Colloid Au-enhanced DNA immobilization for the electrochemical detection of sequence-specific DNA. / J Electroanal Chem 2001,510(1):78鈥?5. CrossRef
    84. Le JD, Pinto Y, Seeman NC, Musier-Forsyth K, Taton TA, Kiehl RA: DNA-templated self-assembly of metallic nanocomponent arrays on a surface. / Nano Lett 2004,4(12):2343鈥?347. CrossRef
    85. Kulkarni A, Amin R, Kim H, Hong BH, Park SH, Kim T: Photoresistivity and optical switching of graphene with DNA lattices. / Curr Appl Phys 2011,12(3):623鈥?27. CrossRef
    86. Kim J, Kasture M, Hwang T, Kulkarni A, Amin R, Park S, Kim T, Gosavi S: Graphene-based waveguides: novel method for detecting biological activity. / Appl Biochem Biotechnol 2012,167(5):1069鈥?075. CrossRef
    87. Carr PA, Park JS, Lee YJ, Yu T, Zhang S, Jacobson JM: Protein-mediated error correction for de novo DNA synthesis. / Nucleic Acids Res 2004,32(20):e162-e162. CrossRef
    88. Cano T, Murphy JC, Fox GE, Willson RC: Separation of genomic DNA from plasmid DNA by selective renaturation with immobilized metal affinity capture. / Biotechnol Prog 2005,21(5):1472鈥?477. CrossRef
    89. Kaur M, Makrigiorgos GM: Novel amplification of DNA in a hairpin structure: towards a radical elimination of PCR errors from amplified DNA. / Nucleic Acids Res 2003,31(6):e26-e26. CrossRef
    90. Smith J, Modrich P: Removal of polymerase-produced mutant sequences from PCR products. / Proc Natl Acad Sci 1997,94(13):6847鈥?850. CrossRef
    91. Wu Q, Christensen LA, Legerski RJ, Vasquez KM: Mismatch repair participates in error-free processing of DNA interstrand crosslinks in human cells. / EMBO Rep 2005,6(6):551鈥?57. CrossRef
    92. Hughes RA, Miklos AE, Ellington AD: Enrichment of error-free synthetic DNA sequences by CEL I nuclease. / Curr Protoc Mol Biol 2012,3(3.24):10.
    93. Yang B, Wen X, Kodali NS, Oleykowski CA, Miller CG, Kulinski J, Besack D, Yeung JA, Kowalski D, Yeung AT: Purification, cloning, and characterization of the CEL I nuclease. / Biochemistry 2000,39(13):3533鈥?541. CrossRef
    94. Oleykowski CA, Mullins CRB, Godwin AK, Yeung AT: Mutation detection using a novel plant endonuclease. / Nucleic Acids Res 1998,26(20):4597鈥?602. CrossRef
    95. Igarashi H, Nagura K, Sugimura H: CEL I enzymatic mutation detection assay. / Biotechniques 2000, 29:44鈥?8.
    96. Hughes RA, Miklos AE, Ellington AD: Gene synthesis: methods and applications. / Methods Enzymol 2011, 498:277鈥?09. CrossRef
    97. Ma S, Tang N, Tian J: DNA synthesis, assembly and applications in synthetic biology. / Curr Opin Chem Biol 2012,16(3鈥?):260鈥?67. CrossRef
    98. Matzas M, St盲hler PF, Kefer N, Siebelt N, Boisgu茅rin V, Leonard JT, Keller A, St盲hler CF, H盲berle P, Gharizadeh B, Babrzadeh F, Church GM: High-fidelity gene synthesis by retrieval of sequence-verified DNA identified using high-throughput pyrosequencing. / Nat Biotechnol 2010,28(12):1291鈥?294. CrossRef
  • 作者单位:Muniza Zahid (1)
    Byeonghoon Kim (2)
    Rafaqat Hussain (3)
    Rashid Amin (1)
    Sung Ha Park (2)

    1. Interdisciplinary Research Center in Biomedical Materials (IRCBM), COMSATS Institute of Information Technology, Lahore, 54000, Pakistan
    2. Department of Physics & SKKU Advanced Institute of Nanotechnology (SAINT), Sungkyunkwan University, Suwon, 440-746, South Korea
    3. Ibnu Sina Institute for Fundamental Science Studies, Universiti Teknologi Malaysia, 81310 UTM Skudai, Johor Darul Ta鈥檢im, Malaysia
  • ISSN:1556-276X
文摘
In addition to its genetic function, DNA is one of the most distinct and smart self-assembling nanomaterials. DNA nanotechnology exploits the predictable self-assembly of DNA oligonucleotides to design and assemble innovative and highly discrete nanostructures. Highly ordered DNA motifs are capable of providing an ultra-fine framework for the next generation of nanofabrications. The majority of these applications are based upon the complementarity of DNA base pairing: adenine with thymine, and guanine with cytosine. DNA provides an intelligent route for the creation of nanoarchitectures with programmable and predictable patterns. DNA strands twist along one helix for a number of bases before switching to the other helix by passing through a crossover junction. The association of two crossovers keeps the helices parallel and holds them tightly together, allowing the assembly of bigger structures. Because of the DNA molecule's unique and novel characteristics, it can easily be applied in a vast variety of multidisciplinary research areas like biomedicine, computer science, nano/optoelectronics, and bionanotechnology.

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