Genome-wide identification and analysis of genes associated with lysigenous aerenchyma formation in rice roots

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• 作者：Yo-Han Yoo (1) (2)
  Hong-Keun Choi (3)
  Ki-Hong Jung (1) (2)
  
  1. Department of Plant Molecular Systems Biotechnology & Crop Biotech Institute ; Kyung Hee University ; Yongin ; 446-701 ; Korea
  2. Graduate School of Biotechnology ; Kyung Hee University ; Yongin ; 446-701 ; Korea
  3. Department of Biological Science ; Ajou University ; Suwon ; 443-749 ; Korea
  
• 关键词：Lysigenous aerenchyma ; Programmed cell death ; Rice ; Root ; Transcriptome analysis
• 刊名：Journal of Plant Biology
• 出版年：2015
• 出版时间：April 2015
• 年：2015
• 卷：58
• 期：2
• 页码：117-127
• 全文大小：1,439 KB
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• 刊物主题：Plant Sciences; Plant Breeding/Biotechnology; Plant Genetics & Genomics; Plant Systematics/Taxonomy/Biogeography; Plant Ecology;
• 出版者：Springer Berlin Heidelberg
• ISSN：1867-0725

文摘

Plants develop lysigenous aerenchyma to improve their survival in soils that are low in oxygen, such as in paddy fields. To investigate the genes involved in this formation in rice, we sampled the lysigenous aerenchyma formed part (LAFP) and lysigenous aerenchyma unformed part (LAUP) from seminal roots and conducted transcriptome analysis with a whole-genome microarray platform, i.e., Agilent 4X44K arrays. In all, 268 genes were highly upregulated in LAFP and 259 genes in LAUP, showing fold-changes of at least 1.5 (log2) and p-values