Identification and characterization of NF-YB family genes in tung tree

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• 作者：Susu Yang ; Yangdong Wang ; Hengfu Yin ; Haobo Guo…
• 关键词：CCAAT box ; binding factor ; NF ; YB/HAP3/CBF ; A ; Tung tree ; Vernicia fordii
• 刊名：Molecular Genetics and Genomics
• 出版年：2015
• 出版时间：December 2015
• 年：2015
• 卷：290
• 期：6
• 页码：2187-2198
• 全文大小：4,151 KB
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• 作者单位：Susu Yang (1) (2)
  Yangdong Wang (1) (2)
  Hengfu Yin (2)
  Haobo Guo (3)
  Ming Gao (1) (2)
  Huiping Zhu (1) (2)
  Yicun Chen (1) (2)
  
  1. State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, 100091, People鈥檚 Republic of China
  2. Institute of Subtropical Foresty, Chinese Academy of Foresty, Daqiao Road No.73, Fuyang District, Hangzhou, Zhejiang, 311400, People鈥檚 Republic of China
  3. Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA
  
• 刊物类别：Biomedical and Life Sciences
• 刊物主题：Life Sciences
  Cell Biology
  Biochemistry
  Microbial Genetics and Genomics
  
• 出版者：Springer Berlin / Heidelberg
• ISSN：1617-4623

文摘

The NF-YB transcription factor gene family encodes a subunit of the CCAAT box-binding factor (CBF), a highly conserved trimeric activator that strongly binds to the CCAAT box promoter element. Studies on model plants have shown that NF-YB proteins participate in important developmental and physiological processes, but little is known about NF-YB proteins in trees. Here, we identified seven NF-YB transcription factor-encoding genes in Vernicia fordii, an important oilseed tree in China. A phylogenetic analysis separated the genes into two groups; non-LEC1 type (VfNF-YB1, 5, 7, 9, 11, 13) and LEC1-type (VfNF-YB 14). A gene structure analysis showed that VfNF-YB 5 has three introns and the other genes have no introns. The seven VfNF-YB sequences contain highly conserved domains, a disordered region at the N terminus, and two long helix structures at the C terminus. Phylogenetic analyses showed that VfNF-YB family genes are highly homologous to GmNF-YB genes, and many of them are closely related to functionally characterized NF-YBs. In expression analyses of various tissues (root, stem, leaf, and kernel) and the root during pathogen infection, VfNF-YB1, 5, and 11 were dominantly expressed in kernels, and VfNF-YB7 and 9 were expressed only in the root. Different VfNF-YB family genes showed different responses to pathogen infection, suggesting that they play different roles in the pathogen response. Together, these findings represent the first extensive evaluation of the NF-YB family in tung tree and provide a foundation for dissecting the functions of VfNF-YB genes in seed development, stress adaption, fatty acid synthesis, and pathogen response. Keywords CCAAT box-binding factor NF-YB/HAP3/CBF-A Tung tree Vernicia fordii