Detailed genetic analysis of hemagglutinin-neuraminidase glycoprotein gene in human parainfluenza virus type 1 isolates from patients with acute respiratory infection between 2002 and 2009 in Yamagata prefecture, Japan

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• 作者：Katsumi Mizuta (1)
  Mika Saitoh (2)
  Miho Kobayashi (2)
  Hiroyuki Tsukagoshi (2)
  Yoko Aoki (1)
  Tatsuya Ikeda (1)
  Chieko Abiko (1)
  Noriko Katsushima (3)
  Tsutomu Itagaki (4)
  Masahiro Noda (5)
  Kunihisa Kozawa (2)
  Tadayuki Ahiko (1)
  Hirokazu Kimura (2) (6)
  
• 关键词：Human parainfluenza virus ; Maximum likelihood (ML) method ; Phylogenetic analysis
• 刊名：Virology Journal
• 出版年：2011
• 出版时间：December 2011
• 年：2011
• 卷：8
• 期：1
• 全文大小：245KB
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• 作者单位：Katsumi Mizuta (1)
  Mika Saitoh (2)
  Miho Kobayashi (2)
  Hiroyuki Tsukagoshi (2)
  Yoko Aoki (1)
  Tatsuya Ikeda (1)
  Chieko Abiko (1)
  Noriko Katsushima (3)
  Tsutomu Itagaki (4)
  Masahiro Noda (5)
  Kunihisa Kozawa (2)
  Tadayuki Ahiko (1)
  Hirokazu Kimura (2) (6)
  
  1. Yamagata Prefectural Institute of Public Health, 1-6-6 Toka-machi, Yamagata-shi, Yamagata, 990-0031, Japan
  2. Gunma Prefectural Institute of Public Health and Environmental Sciences, 378 Kamioki-machi, Maebashi-shi, Gunma, 371-0052, Japan
  3. Katsushima Pediatric Clinic, 4-4-12 Minamidate, Yamagata-shi, Yamagata, 990-2461, Japan
  4. Yamanobe Pediatric Clinic, 2908-14 Yamanobe-machi, Higashimurayama-gun, Yamagata, 990-0301, Japan
  5. Department of Virology III, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayama-shi, Tokyo, 208-0011, Japan
  6. Infectious Disease Surveillance Center, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayama-shi, Tokyo, 208-0011, Japan
  
• ISSN：1743-422X

文摘

Background Human parainfluenza virus type 1 (HPIV1) causes various acute respiratory infections (ARI). Hemagglutinin-neuraminidase (HN) glycoprotein of HPIV1 is a major antigen. However, the molecular epidemiology and genetic characteristics of such ARI are not exactly known. Recent studies suggested that a phylogenetic analysis tool, namely the maximum likelihood (ML) method, may be applied to estimate the evolutionary time scale of various viruses. Thus, we conducted detailed genetic analyses including homology analysis, phylogenetic analysis (using both the neighbor joining (NJ) and ML methods), and analysis of the pairwise distances of HN gene in HPIV1 isolated from patients with ARI in Yamagata prefecture, Japan. Results A few substitutions of nucleotides in the second binding site of HN gene were observed among the present isolates. The strains were classified into two major clusters in the phylogenetic tree by the NJ method. Another phylogenetic tree constructed by the ML method showed that the strains diversified in the late 1980s. No positively selected sites were found in the present strains. Moreover, the pairwise distance among the present isolates was relatively short. Conclusions The evolution of HN gene in the present HPIV1 isolates was relatively slow. The ML method may be a useful phylogenetic method to estimate the evolutionary time scale of HPIV and other viruses.