Patterns of genetic divergence among populations of the pseudometallophyte Biscutella laevigata from southern Poland

详细信息    查看全文

• 作者：Alicja A. Babst-Kostecka ; Christian Parisod ; Cécile Godé…
• 关键词：Adaptation ; Biogeography ; Genetic structure ; Metal trace elements ; Pollution ; Relic
• 刊名：Plant and Soil
• 出版年：2014
• 出版时间：October 2014
• 年：2014
• 卷：383
• 期：1-2
• 页码：245-256
• 全文大小：455 KB
• 参考文献：1. Antonovics J, Bradshaw AD, Turner RG (1971) Heavy metal tolerance in plants. Adv Ecol Res 7:1-5 CrossRef
  2. Assun??o AGL, Bookum WM, Nelissen HJM, Vooijs R, Schat H, Ernst WHO (2003) Differential metal-specific tolerance and accumulation patterns among Thlaspi caerulescens populations originating from different soil types. New Phytol 159:411-19 CrossRef
  3. Baumbach H, Hellwig FH (2007) Genetic differentiation of metallicolous and non-metallicolous Armeria maritima (Mill.) Willd. taxa (Plumbaginaceae) in Central Europe. Plant Syst Evol 269:245-58 CrossRef
  4. Beaumont MA, Zhang W, Balding DJ (2002) Approximate Bayesian computation in population genetics. Genetics 162:2025-035
  5. Bert V, Bonnin I, Saumitou-Laprade P, de Laguérie P, Petit D (2002) Do / Arabidopsis halleri from nonmetalicolous populations accumulate zinc and cadmium more effectively than those from metallicolous populations? New Phytol 155:47-7 CrossRef
  6. Bettin O, Cornejo C, Edwards PJ, Holderegger R (2007) Phylogeography of the high alpine plant / Senecio halleri (Asteraceae) in the European Alps: / in situ glacial survival with postglacial stepwise dispersal into peripheral areas. Mol Ecol 16:2517-524 CrossRef
  7. Bickham JW, Sandhu S, Hebert PDN, Chikhi L, Athwal R (2000) Effects of chemical contaminants on genetic diversity in natural populations: implications for biomonitoring and ecotoxicology. Mutat Res 463:33-1 CrossRef
  8. Bizoux JP, Da?nou K, Raspé O, Lutts S, Mahy G (2008) Fitness and genetic variation of Viola calaminaria, an endemic metallophyte: implications of population structure and history. Plant Biol 10:684-93 CrossRef
  9. Cabala J, Krupa P, Misz-Kennan M (2009) Heavy metals in Mycorrhizal Rhizospheres contaminated By Zn-Pb mining and smelting around Olkusz in Southern Poland. Water Air Soil Pollut 199:139-49 CrossRef
  10. Clark PU, Dyke AS, Shakun JD et al (2009) The last glacial maximum. Science 325:710-14 CrossRef
  11. Cornuet J-M, Ravigne V, Estoup A (2010) Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0). BMC Bioinformatics:11-01
  12. Cornuet JM, Santos F, Beaumont MA et al (2008) Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation. Bioinformatics 24(23):2713-719 CrossRef
  13. Dannemann A (2000) Der Einfluss von Fragmentierung und Populationsgr??e auf die genetische Variation und Fitness von seltenen Pflanzenarten am Beispiel von Biscutella laevigata (Brassicaceae). Dissertationes Botanicae, Stuttgart
  14. Deng J, Liao B, Ye M, Deng D, Lan C, Shu W (2007) The effects of heavy metal pollution on genetic diversity in zinc/cadmium hyperaccumulator Sedum alfredii populations. Plant Soil 297:83-2 CrossRef
  15. Di Rienzo A, Peterson AC, Garza JC, Valdes AM, Slatkin M, Freimer NB (1994) Mutational processes of simple-sequence repeat loci in human populations. Proc Natl Acad Sci U S A 91:3166-170 CrossRef
  16. Dray S, Dufour AB (2007) The ade4 package: implementing the duality diagram for ecologists. J Stat Softw 22:1-0
  17. Ernst WHO (2006) Evolution of metal tolerance in higher plants. For Snow Landsc Res 80:251-74
  18. Ernst WHO, Schat HS, Verkleij JAC (1990) Evolutionary biology of metal resistance in / Silene vulgaris. Evol Trend Plant 4:45-1
  19. Escarré J, Lefèbvre C, Gruber W, Leblanc M, Lepart J, Rivière Y, Delay B (2000) Zinc and Cadmium hyperaccumulation by / Thlaspi caerulescens from metalliferous and nonmetalliferous sites in the Mediterranean area: implications for phytoremediation. New Phytol 145:429-37 CrossRef
  20. Escudero M, Valcárcel V, Vargas P, Luce?o M (2010) Bipolar disjunctions in Carex: long-distance dispersal, vicariance, or parallel evolution? Flora Morphol Distrib Funct Ecol Plant 205:118-27 CrossRef
  21. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611-620 CrossRef
  22. Gasser M (1986) Genetic-ecological investigations in / Biscutella levigata L. Veroeffentlichungen Des Geobotanischen Institutes des ETH 86:7-6
  23. Goudet J (2001) Fstat, a program to estimate and test gene diversities and fixation indices (version 2.9.3)
  24. Goudet J (2005) HIERFSTAT, a package for R to compute and test hierarchical F-statistics. Mol Ecol Notes 5:184-86 CrossRef
  25. Grodzinska K, Korzeniak U, Szarek-Lukaszewska G, Godzik B (2000) Colonization of zinc mine spoils in southern Poland - preliminary studies on vegetation, seed rain and seed bank. Fragm Flor Geobot 45:123-45
  26. Hewitt GM (1999) Post-glacial re-colonization of European biota. Biol J Linn Soc 68:87-12 CrossRef
  27. Hewitt GM (2000) The genetic legacy of the Quaternary ice ages. Nature 405:907-13 CrossRef
  28. Hutchison DW, Templeton AR (1999) Correlation of pair wise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution 53:1898-914 CrossRef
  29. Jalas J, Suominen J, Lampinen Re (1996) Atlas Florae Europaeae. Distribution of vascular plants in Europe. 11. Cruciferae (Ricotia to Raphanus). The committee for mapping the flora of Europe & societas biologica fennica vanamo, Helsinki
  30. J?drzejczyk-Korycińska M (2006) Floristic diversity in calamine areas of the Silesia-Cracow Monocline. Biodivers Res Conserv 3-:340-43
  31. Kalinowski ST (2004) Counting alleles with rarefaction: private alleles and hierarchical sampling designs. Conserv Genet 5:539-43 CrossRef
  32. Kang SS, Chung MG (2000) High levels of allozyme variation within populations and low allozyme divergence within and among species of Hemerocallis (Liliaceae). Am J Bot 87:1634-646 CrossRef
  33. Kropf M, Comes HP, Kadereit JW (2006) Long-distance dispersal vs vicariance: the origin and genetic diversity of alpine plants in the Spanish Sierra Nevada. New Phytol 172:169-84 CrossRef
  34. Lambinon J, Auquier P (1964) La flore et la végétation des terrains calaminaires de la Wallonie septentrionale et de la Rhénanie aixoise. Types chorologiques et groupes écologiques. Natura mosana 16:113-30
  35. Landenberger A, Kieba?a A, Michalik M (2003) Heavy mineral assemblages from recent stream alluvia in the Tatra Mts. Pol Tow Mineral, Prace Spec 19:79-1
  36. Leducq J-B, Cl S, Gosset C et al (2013) Intriguing small-scale spatial distribution of chloropastic and nuclear diversity in the endangered plant Biscutella neustriaca (Brassicaceae). Conserv Genet 14:65-7 CrossRef
  37. Lefèbvre C, Vernet P (1990) Microevolutionary processes on contaminated deposits. In: Shaw J (ed) Heavy metal tolerance in plants: evolutionary aspects. CRC Press Inc, Boca Raton, pp 285-00
  38. Linhart YB, Grant MC (1996) Evolutionary significance of local genetic differentiation in plants. Annu Rev Ecol Syst 27:237-77 CrossRef
  39. Luikart G, Cornuet J-M (1998) Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv Biol 12:228-37 CrossRef
  40. Luikart G, Sherwin WB, Steele BM, Allendorf FW (1998) Usefulness of molecular markers for detecting population bottlenecks via monitoring genetic change. Mol Ecol 7:963-74 CrossRef
  41. Macnair MR (1987) Heavy metal tolerance in plants: a model evolutionary system. Trends Ecol Evol 2:354 CrossRef
  42. Macnair MR, Tilstone GH, Smith SE (2000) The genetics of metal tolerance and accumulation in higher plants. In: Terry N, Banuelos G, Vangronsveld J (eds) Phytoremediation of contaminated soil and water. CRC Press, Boca Raton, pp 235-50
  43. Mantel NA (1967) The detection of disease clustering and a general regression approach. Cancer Res 27:209-20
  44. Manton I (1934) The Problem of Biscutella Laevigata L. Z. Indukt. Abstammungs- Vererbungsl. 67:41-7
  45. Mengoni A, Barabesi C, Gonnelli C, Galardi F, Gabbrielli R, Bazzicalupo M (2001) Genetic diversity of heavy metal-tolerant populations in / Silene paradoxa L. (Caryophyllaceae): a chloroplast microsatellite analysis. Mol Ecol 10:1909-916 CrossRef
  46. Meyer C-L, Kostecka AA, Saumitou-Laprade P, Créach A, Castric V, Pauwels M, Frérot H (2010) Variability of zinc tolerance among and within populations of the pseudometallophyte / Arabidopsis halleri and possible role of directional selection. New Phytol 185:130-42 CrossRef
  47. Nordal I, Haraldsen KB, Ergon A, Eriksen AB (1999) Copper resistance and genetic diversity in / Lychnis alpina (Caryophyllaceae) populations on mining sites. Folia Geobot 34:471-81 CrossRef
  48. Oberdorfer E (2001) Pflanzensoziologische exkursionsflora. Folia geobotanica et phytotaxonomica. Ulmer Verlag, Stuttgart
  49. Olowokudejo JD, Heywood VH (1984) Cytotaxonomy and breeding system of the genusBiscutella (Cruciferae). Plant Syst Evol 145:291-09 CrossRef
  50. Parisod C, Bonvin G (2008) Fine-scale genetic structure and marginal processes in an expanding population of Biscutella laevigata L. (Brassicaceae). Heredity 101:536-42 CrossRef
  51. Parisod C, Christin PA (2008) Genome-wide association to fine-scale ecological heterogeneity within a continuous population of / Biscutella laevigata (Brassicaceae). New Phytol 178:436-47 CrossRef
  52. Pauwels M, Frérot H, Bonnin I, Saumitou-Laprade P (2006) A broad-scale analysis of population differentiation for Zn tolerance in an emerging model species for tolerance study: / Arabidopsis halleri (Brassicaceae). J Evol Biol 19:1838-850 CrossRef
  53. Pauwels M, Saumitou-Laprade P, Holl A-C, Petit D, Bonnin I (2005) Multiple origin of metallicolous populations of the pseudometallophyte / Arabidopsis halleri ( / Brassicaceae) in Central Europe: the cpDNA testimony. Mol Ecol 14:4403-414 CrossRef
  54. Peralta-Videa JR, Lopez ML, Narayan M, Saupe G, Gardea-Torresdey J (2009) The biochemistry of environmental heavy metal uptake by plants: implications for the food chain. Int J Biochem Cell B 41:1665-677 CrossRef
  55. Po??i? F, Marchiol L, Schat H (2013) Hyperaccumulation of thallium is population-specific and uncorrelated with caesium accumulation in the thallium hyperaccumulator, Biscutella laevigata. Plant Soil 365:81-1 CrossRef
  56. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-59
  57. Przemyski A, Piwowarczyk R (2012) Biscutella laevigata L. in the Polish uplands - new data on its distribution from nida basin. Botanica - Steciana:21-9
  58. Sánchez Go?i MF, Loutre MF, Crucifix M et al (2005) Increasing vegetation and climate gradient in Western Europe over the Last Glacial Inception (122-10 ka): data-model comparison. Earth Planet Sci Lett 231:111-30 CrossRef
  59. Sch?nswetter P, Tribsch A, Stehlik I, Niklfeld H (2004) Glacial history of high alpine / Ranunculus glacialis (Ranunculaceae) in the European Alps in a comparative phylogeographical context. Biol J Linn Soc 81:183-95 CrossRef
  60. Skalińska M (1950) Studies in chromosome numbers of Polish Angiosperms. Acta Soc Bot Pol 20:45-8
  61. S?omka A, Sutkowska A, Szczepaniak M, Malec P, Mitka J, Kuta E (2011) Increased genetic diversity of Viola tricolor L. (Violaceae) in metal-polluted environments. Chemosphere 83:435-42 CrossRef
  62. Szafer W (1930) Element górski we florze ni?u polskiego (The mountain element in the flora of the Polish Plain) vol 29. Rozprawy Wydz. Mat.-Przyr. 69, dz.B, ser.III
  63. Szarek-?ukaszewska G, Niklińska M (2002) Concentration of alkaline and heavy metals in Biscutella laevigata L. and Plantago lanceolata L. growing on calamine spoils (S Poland). Acta Biol Cracov Ser Bot 44:29-8
  64. Taberlet P, Cheddadi R (2002) Ecology. Quaternary refugia and persistence of biodiversity. Science 297:2009-010 CrossRef
  65. Tremetsberger K, K?nig C, Samuel R, Pinsker W, Stuessy TF (2002) Infraspecific genetic variation in Biscutella laevigata (Brassicaceae): new focus on Irene Manton’s hypothesis. Plant Syst Evol:163-81
  66. Tribsch A, Schonswetter P, Stuessy TF (2002) / Saponaria Pumila (Caryophyllaceae) and the Ice Age in the European Alps. Am J Bot 89:2024-033 CrossRef
  67. Vekemans X, Hardy OJ (2004) New insights from fine-scale spatial genetic structure analyses in plant populations. Mol Ecol 13:921-35 CrossRef
  68. W?chalewski T (1999) Kwasowo?? czynna i potencjalna gleby [Activ and potential acidity of soil]. In: Szczepaniec–Ci?ciak E, Ko?cielniak P (eds) Chemia ?rodowiska: ?wiczenia i seminaria, vol 2. Jagiellonian University, Krakow, pp 21-4
  69. Wierzbicka M, Pielichowska M (2004) Adaptation of Biscutella laevigata L, a metal hyperaccumulator, to growth on a zinc-lead waste heap in southern Poland. I: differences between waste-heap and mountain populations. Chemosphere 54:1663-674 CrossRef
  70. Wojcik M, Dresler S, Jawor E, Kowalczyk K, Tukiendorf A (2013) Morphological, physiological, and genetic variation between metallicolous and nonmetallicolous populations of Dianthus carthusianorum. Chemosphere 90:1249-257 CrossRef
  71. Wóycicki Z (1913) Obrazy ro?linno?ci Królestwa Polskiego (Vegetationsbilder aus dem Koenigreich Polen). Ro?linno?? terenów galmanowych Boles?awia i Olkusza (Flora der Galmeigebiete von Boles?aw und Olkusz). Kasa Mianowskiego, Warszawa, pp 1-3
  72. Wright S (1949) The genetical structure of populations. Ann Hum Genet 15:323-54
  73. Wu L (1990) Colonization and establishment of plants in contaminated sites. In: Shaw AJ (ed) Heavy metal tolerance in plants: evolutionary aspects. CRC Press, Boca Raton, pp 269-84
  74. Ye M, Liao B, Li JT, Mengoni A, Hu M, Luo WC, Shu WS (2012) Contrasting patterns of genetic divergence in two sympatric pseudo-metallophytes: rumex acetosa L. and Commelina communis L. BMC Evol Biol 12:84-7 CrossRef
  75. Zaj?c M (1996) Mountain vascular plants in the polish lowlands. Pollut Bot Stud 11:1-2
  
• 作者单位：Alicja A. Babst-Kostecka (1) (2) (3)
  Christian Parisod (4)
  Cécile Godé (2)
  Pierre Vollenweider (3)
  Maxime Pauwels (2)
  
  1. Institute of Botany Polish Academy of Sciences, Lubicz 46, 31512, Krakow, Poland
  2. Laboratoire de Génétique et Evolution des Populations Végétales, FRE CNRS 3268, Université de Lille-Lille1, 59655, Villeneuve d’Ascq, France
  3. Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
  4. Laboratory of Evolutionary Botany, Institute of Biology, University of Neuchatel, 2000, Neuchatel, Switzerland
  
• ISSN：1573-5036

文摘

Background and aims Pseudometallophytes are model organisms for adaptation and population differentiation because they persist in contrasting edaphic conditions of metalliferous and non-metalliferous habitats. We examine patterns of genetic divergence and local adaptation of Biscutella laevigata to assess historical and evolutionary processes shaping its genetic structure. Methods We sampled all known populations of B. laevigata in Poland and analyzed respective soil metal concentrations. For genotyping we used nine nuclear microsatellite loci. Population genetic pools were identified (Bayesian clustering) and we estimated genetic parameters and demographic divergence between metallicolous and non-metallicolous populations (ABC-approach). Results Populations clustered into two groups which corresponded to their edaphic origin and diverged 1,200 generations ago. We detected a significant decrease in genetic diversity and evidence for a recent bottleneck in metallicolous populations. Genetic structure was unrelated to site distribution but is rather influenced by environmental conditions (i.e. soil metal concentration). Conclusions The intriguing disjunctive distribution of B. laevigata in Poland results from a fragmentation of the species range during the Holocene, rather than recent long-distance-dispersal events. The genetic structure of populations, however, continues to be modified by microevolutionary processes at anthropogenic sites. These clear divergence patterns promote B. laevigata as a model species for plant adaptation to polluted environments.