Effects of a range expansion on adaptive and neutral genetic diversity in dispersal limited Hazel grouse (Bonasa bonasia) in the French Alps
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- 作者：Jani Rózsa ; Tanja M. Strand ; Marc Montadert ; Radoslav Kozma…
- 关键词：Adaptive genetic diversity ; MHC ; Microsatellites ; Migration ; Biogeography ; Range expansion ; Dispersal limitation
- 刊名：Conservation Genetics
- 出版年：2016
- 出版时间：April 2016
- 年：2016
- 卷：17
- 期：2
- 页码：401-412
- 全文大小：1,200 KB
- 参考文献：Arguello JR, Little AM, Bohan E, Goldman JM, Marsh SGE, Madrigal JA (1998) High resolution HLA class I typing by reference strand mediated conformation analysis (RSCA). Tissue Antigens 52:57–66CrossRef PubMed
Beerli P (2006) Comparison of Bayesian and maximum-likelihood inference of population genetic parameters. Bioinformatics 22:341–345CrossRef PubMed
Burri R, Salamin N, Studer RA, Roulin A, Fumagalli L (2010) Adaptive divergence of ancient gene duplicates in the avian MHC class IIB. Mol Biol Evol 27:2360–2374CrossRef PubMed
Canestrelli D, Aloise G, Cecchetti S, Nascetti G (2010) Birth of a hotspot of intraspecific genetic diversity: notes from the underground. Mol Ecol 19:5432–5451CrossRef PubMed
Chaves LD, Faile GM, Krueth SB, Hendrickson JA, Reed KM (2010) Haplotype variation, recombination, and gene conversion within the turkey MHC-B locus. Immunogenetics 62:465–477CrossRef PubMed
Chao A, Jost L, Chiang SC, Jiang YH, Chazdon R (2008) A two-stage probabilistic approach to multiple-community similarity indices. Biometrics 64:1178–1186CrossRef PubMed
Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001–2014PubMed PubMedCentral
Dewoody YD, Dewoody JA (2005) On the estimation of genome-wide heterozygosity using molecular markers. J Hered 96:85–88CrossRef PubMed
Earl DA, von Holdt BM (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4:359–361CrossRef
Ekblom R, Sæther SA, Jacobsson P, Fiske P, Sahlman T, Grahn M, Kålås JA, Höglund J (2007) Spatial pattern of MHC class II variation in the great snipe (Gallinago media). Mol Ecol 16:1439–1451CrossRef PubMed
Ekblom R, Sæther SA, Fiske P, Kålås JA, Höglund J (2010) Balancing selection, sexual selection and geographic structure in MHC genes of Great Snipe. Genetica 138:453–461CrossRef PubMed
Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–567CrossRef PubMed
Excoffier L (2004) Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model. Mol Ecol 13:853–864CrossRef PubMed
Excoffier L, Foll M, Petit RJ (2009) Genetic consequences of range expansions. Annu Rev Ecol Evol Syst 40:481–501CrossRef
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620CrossRef PubMed
Frankham R (2003) Genetics and conservation biology. CR Biol 326:22–29CrossRef
Frankham R, Ballou JD, Briscoe DA (2009) Introduction to conservation genetics. Cambridge University Press, Cambridge
Goudet J (1995) FSTAT (Version 1.2): a computer program to calculate F-statistics. J Hered 86:485–486
Hanski I (1991) Metapopulation dynamics: brief history and conceptual domain. Biol J Linn Soc 42:3–16CrossRef
Holderegger R, Kamm K, Gugerli F (2006) Adaptive versus neutral genetic diversity: implications for landscape genetics. Landsc Ecol 21:797–807CrossRef
Jakobsson M, Rosenberg NA (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23:1801–1806CrossRef PubMed
Jombart T (2008) ADEGENET: a R package for the multivariate analysis of genetic markers. Bioinformatics 24:1403–1405CrossRef PubMed
Jost L (2008) GST and its relatives do not measure differentiation. Mol Ecol 17:4015–4026CrossRef PubMed
Lacy RC (1997) Importance of genetic variation to the viability of mammalian populations. J Mammal 78:320–335CrossRef
Lowe WH, Allendorf FW (2010) What can genetics tell us about population connectivity? Mol Ecol 19:3038–3051CrossRef PubMed
Meirmans PG, Hedrick PW (2011) Assessing population structure: FST and related measures. Mol Ecol Resour 11:5–18CrossRef PubMed
Meyer-Lucht Y, Mulder KP, James MC, McMahon BJ, Buckley K, Piertney SB, Höglund J Adaptive and neutral genetic differentiation among Scottish and endangered Irish ted grouse (Lacopus lagopus scotica). Conservation Genetics (in press)
Milinski M, Griffiths SW, Reusch TBH, Boehm T (2010) Costly major histocompatibility complex signals produced only by reproductively active males, but not females, must be validated by a ‘maleness signal’ in three-spined sticklebacks. Proc R Soc B 277:391–398CrossRef PubMed PubMedCentral
Montadert M, Léonard P (2003) Survival in an expanding hazel grouse Bonasa bonasia population in the southeastern French Alps. Wildl Biol 9:357–364
Montadert M, Léonard P (2006) Post-juvenile dispersal of Hazel Grouse Bonasa bonasia in an expanding population of the southeastern French Alps. Ibis 148:1–13CrossRef
Moritz C (1994) Defining ‘Evolutionary Significant Units’ for conservation. TREE 9:373–375PubMed
Nei M (1972) Genetic distance between populations. Am Nat 106:283–292CrossRef
Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
Newman D, Pilson D (1997) Increased probability of extinction due to decreased genetic effective population size: experimental populations of Clarkia pulchella. Evolution 51:354–362CrossRef
Opdam P, Wascher D (2004) Climate change meets habitat fragmentation: linking landscape and biogeographical scale levels in research and conservation. Biol Conserv 117:285–297CrossRef
Petit RJ, Aguinagalde I, Beaulieu JL, Bittkau C, Brewer S, Cheddadi R, Ennos R, Fineschi S, Grivet D, Lascoux M, Mohanty A, Müller-Starck G, Demesure-Musch B, Palmé A, Marti JP, Rendell S, Vendramin GG (2003) Glacial refugia: hotspots but not melting pots of genetic diversity. Science 300:1563–1565CrossRef PubMed
Piertney SB, Oliver MK (2006) The evolutionary ecology of the major histocompatibility complex. Heredity 96:7–21PubMed
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959PubMed PubMedCentral
Ray N, Currat M, Excoffier L (2003) Intra-deme molecular diversity in spatially expanding populations. Mol Biol Evol 20:76–86CrossRef PubMed
Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered 86:248–249
Reed DH, Frankham R (2003) Correlation between fitness and genetic diversity. Conserv Biol 17:230–237CrossRef
Rosenberg NA (2004) DISTRUCT: a program for graphical display of population structure. Mol Ecol Notes 4:137–138CrossRef
Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145:1219–1228PubMed PubMedCentral
Sahlsten J, Thörngren H, Höglund J (2008) Inference of hazel grouse population structure using multilocus data: a landscape genetic approach. Heredity 101:475–482CrossRef PubMed
Seddon JM, Baverstock PR (1998) Variation on islands: major histocompatibility complex (Mhc) polymorphism in populations of the Australian bush rat. Mol Ecol 8:2071–2079CrossRef
Segelbacher G, Paxton R, Steinbrueck G, Trontelj P, Storch I (2000) Characterisation of microsatellites in capercaillie (Tetrao urogallus) (AVES). Mol Ecol 9:1934–1935CrossRef PubMed
Slatkin M (1995) A measure of population sub division based on microsatellite allele frequencies. Genetics 139:457–462PubMed PubMedCentral
Sokal RR, Wartenberg DE (1983) A test of spatial autocorrelation analysis using an isolation-by-distance model. Genetics 105:219–237PubMed PubMedCentral
Spielman D, Brook BW, Frankham R (2004) Most species are not driven to extinction before genetic factors impact them. PNAS 101:15261–15264CrossRef PubMed PubMedCentral
Strand TM, Höglund J (2011) Genotyping of black grouse MHC class II B using reference Strand-Mediated Conformational Analysis (RSCA). BMC Research Notes 4:183CrossRef PubMed PubMedCentral
Strand TM, Westerdahl H, Höglund J, Alatalo RV, Siitari H (2007) The Mhc class II of the Black grouse (Tetrao tetrix) consists of low numbers of B and Y genes with variable diversity and expression. Immunogenetics 59:725–734CrossRef PubMed
Storch I (2000) Grouse status survey and conservation action plan 2000–2004. WPA/BirdLife/SSC Grouse Specialist Group, Cambridge
Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538CrossRef
Weir BS, Cockerham CC (1984) Estimating F-Statistics for the analysis of population structure. Evolution 38:1358–1370CrossRef
Wilson GA, Rannala B (2003) Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163:1177–1191PubMed PubMedCentral
Willi Y, Van Buskirk J, Hoffmann AA (2006) Limits to the adaptive potential of small populations. Annu Rev Ecol Evol Syst 37:433–458CrossRef
Wright S (1943) Isolation by distance. Genetics 28:114PubMed PubMedCentral
Zegers G (2000) Genetic variability and resistance to infectious disease with particular emphasis on the major histocompatibility complex in the valley pocket gopher. Ph.D. thesis, University of California, Santa Cruz - 作者单位：Jani Rózsa (1)
Tanja M. Strand (1) (3)
Marc Montadert (2)
Radoslav Kozma (1)
Jacob Höglund (1)
1. Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen18D, 752 36, Uppsala, Sweden
3. Department of Medical Biochemistry and Microbiology, Uppsala University, Box 582, 751 23, Uppsala, Sweden
2. Laboratoire d’Ecologie et d’Ecophysiologie, EA 3184 MRT, UC INRA, Université Franche-Comté, Place Leclercq, 25300, Besançon, France - 刊物类别：Biomedical and Life Sciences
- 刊物主题：Biomedicine
Human Genetics
Animal Anatomy, Morphology and Histology
Plant Sciences
Evolutionary Biology - 出版者：Springer Netherlands
- ISSN：1572-9737
文摘
Biogeographic range expansions, when related to dispersal limitation, may have counter intuitive effects on genetic diversity. At range margins the relative roles of demographic changes, connectivity and genetic diversity need to be integrated for a successful assessment of population viability. Historically the Hazel grouse (Bonasa bonasia) in France was found in the north of the French Alps and also in a disjunct population in the nearby Jura Mountains. The species has recently undergone a range expansion in a north to south axis in the Alps. Local population size estimates and migration patterns during expansion have previously been studied. In this study, we performed genotyping at neutral (microsatellite) and adaptive (MHC) genetic markers in Hazel grouse. We compared diversity and differentiation (FST and DEST) at three sampling localities along the expansion axis in the French Alps and Jura, as well as at two sampling localities in Sweden, where the population has had a long-term continuous and stable distribution. Strong serial founder effects were found between the French localities, resulting in stronger isolation further south, with a relatively high neutral differentiation (pair-wise FST = 0.117). However, the loss of adaptive diversity MHC was slight. No adaptive differentiation (MHC DEST = −0.015) was observed, thus, the French localities can be considered uniform units with regard to MHC diversity, a criterion to treat populations in these localities as a management unit.