Mechanism of chromosomal DNA replication initiation and replication fork stabilization in eukaryotes
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  • 作者:LiHong Wu (1)
    Yang Liu (1)
    DaoChun Kong (1)
  • 关键词:DNA replication origins ; pre ; RC assembly ; replication fork stability ; S phase checkpoint
  • 刊名:Science China Life Sciences
  • 出版年:2014
  • 出版时间:May 2014
  • 年:2014
  • 卷:57
  • 期:5
  • 页码:482-487
  • 全文大小:
  • 参考文献:1. Bell SP, Dutta A. DNA replication in eukaryotic cells. Annu Rev Biochem, 2002, 71: 333-74 CrossRef
    2. Marahrens Y, Stillman B. A yeast chromosomal origin of DNA replication defined by multiple functional elements. Science, 1992, 255: 817-23 CrossRef
    3. Newlon CS, Theis JF. The structure and function of yeast ARS elements. Curr Opin Genet Dev, 1993, 3: 752-58 CrossRef
    4. Palzkill TG, Newlon CS. A yeast replication origin consists of multiple copies of a small conserved sequence. Cell, 1988, 53: 441-50 CrossRef
    5. Clyne RK, Kelly TJ. Genetic analysis of an ARS element from the fission yeast / Schizosaccharomyces pombe. EMBO J, 1995, 14: 6348-357
    6. Okuno Y, Satoh H, Sekiguchi M, Masukata H. Clustered adenine/thymine stretches are essential for function of a fission yeast replication origin. Mol Cell Biol, 1999, 19: 6699-709
    7. Kong D, DePamphilis ML. Site-specific DNA binding of the / Schizosaccharomyces pombe origin recognition complex is determined by the Orc4 subunit. Mol Cell Biol, 2001, 21: 8095-103 CrossRef
    8. Kong D, DePamphilis ML. Site-specific ORC binding, prereplication complex assembly and DNA synthesis at Schizosaccharomyces pombe replication origins. EMBO J, 2002, 21: 5567-576 CrossRef
    9. Arcangioli B, Copeland TD, Klar AJ. Sap1, a protein that binds to sequences required for mating-type switching, is essential for viability in Schizosaccharomyces pombe. Mol Cell Biol, 1994, 14: 2058-065
    10. Arcangioli B, Klar AJ. A novel switch-activating site (SAS1) and its cognate binding factor (SAP1) required for efficient mat1 switching in Schizosaccharomyces pombe. EMBO J, 1991, 10: 3025-032
    11. Aladjem MI, Rodewald LW, Kolman JL, Wahl GM. Genetic dissection of a mammalian replicator in the human beta-globin locus. Science, 1998, 281: 1005-009 CrossRef
    12. Dijkwel PA, Hamlin JL. The Chinese hamster dihydrofolate reductase origin consists of multiple potential nascent-strand start sites. Mol Cell Biol, 1995, 15: 3023-031
    13. Kong D, Coleman TR, DePamphilis ML. Xenopus origin recognition complex (ORC) initiates DNA replication preferentially at sequences targeted by / Schizosaccharomyces pombe ORC. EMBO J, 2003, 22: 3441-450 CrossRef
    14. Austin RJ, Orr-Weaver TL, Bell SP. / Drosophila ORC specifically binds to ACE3, an origin of DNA replication control element. Genes Dev, 1999, 13: 2639-649 CrossRef
    15. Aggarwal BD, Calvi BR. Chromatin regulates origin activity in / Drosophila follicle cells. Nature, 2004, 430: 372-76 CrossRef
    16. Kohzaki H, Murakami Y. Transcription factors and DNA replication origin selection. Bioessays, 2005, 27: 1107-116 CrossRef
    17. Mendez J, Stillman B. Perpetuating the double helix: molecular machines at eukaryotic DNA replication origins. Bioessays, 2003, 25: 1158-167 CrossRef
    18. Arias EE, Walter JC. Strength in numbers: preventing rereplication via multiple mechanisms in eukaryotic cells. Genes Dev, 2007, 21: 497-18 CrossRef
    19. Diffley JF. Regulation of early events in chromosome replication. Curr Biol, 2004, 14: R778-86 CrossRef
    20. Diffley JF, Cocker JH, Dowell SJ, Rowley A. Two steps in the assembly of complexes at yeast replication origins / in vivo. Cell, 1994, 78: 303-16 CrossRef
    21. Tsakraklides V, Bell SP. Dynamics of pre-replicative complex assembly. J Biol Chem, 2010, 285: 9437-443 CrossRef
    22. Remus D, Beuron F, Tolun G, Griffith JD, Morris EP, Diffley JF. Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing. Cell, 2009, 139: 719-30 CrossRef
    23. Evrin C, Clarke P, Zech J, Lurz R, Sun J, Uhle S, Li H, Stillman B, Speck C. A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication. Proc Natl Acad Sci USA, 2009, 106: 20240-0245 CrossRef
    24. Vijayraghavan S, Schwacha A. The eukaryotic Mcm2-7 replicative helicase. Subcell Biochem, 2012, 62: 113-34 CrossRef
    25. Tanaka S, Araki H. Helicase activation and establishment of replication forks at chromosomal origins of replication. Cold Spring Harb Perspect Biol, 2013, 5: 1-4 CrossRef
    26. Jallepalli PV, Kelly TJ. Rum1 and Cdc18 link inhibition of cyclin-dependent kinase to the initiation of DNA replication in / Schizosaccharomyces pombe. Genes Dev, 1996, 10: 541-52 CrossRef
    27. Muzi Falconi M, Brown GW, Kelly TJ. cdc18+ regulates initiation of DNA replication in / Schizosaccharomyces pombe. Proc Natl Acad Sci USA, 1996, 93: 1566-570 CrossRef
    28. Nishitani H, Nurse P. p65cdc18 plays a major role controlling the initiation of DNA replication in fission yeast. Cell, 1995, 83: 397-05 CrossRef
    29. Nishitani H, Lygerou Z, Nishimoto T, Nurse P. The Cdt1 protein is required to license DNA for replication in fission yeast. Nature, 2000, 404: 625-28 CrossRef
    30. Piatti S, Lengauer C, Nasmyth K. Cdc6 is an unstable protein whose de novo synthesis in G1 is important for the onset of S phase and for preventing a ‘reductional-anaphase in the budding yeast / Saccharomyces cerevisiae. EMBO J, 1995, 14: 3788-799
    31. Kearsey SE, Labib K, Maiorano D. Cell cycle control of eukaryotic DNA replication. Curr Opin Genet Dev, 1996, 6: 208-14 CrossRef
    32. Pelizon C, Madine MA, Romanowski P, Laskey RA. Unphosphorylatable mutants of Cdc6 disrupt its nuclear export but still support DNA replication once per cell cycle. Genes Dev, 2000, 14: 2526-533 CrossRef
    33. Nguyen VQ, Co C, Li JJ. Cyclin-dependent kinases prevent DNA re-replication through multiple mechanisms. Nature, 2001, 411: 1068-073 CrossRef
    34. Kiang L, Heichinger C, Watt S, Bahler J, Nurse P. Cyclin-dependent kinase inhibits reinitiation of a normal S-phase program during G2 in fission yeast. Mol Cell Biol, 2009, 29: 4025-032 CrossRef
    35. Cha RS, Kleckner N. ATR homolog Mec1 promotes fork progression, thus averting breaks in replication slow zones. Science, 2002, 297: 602-06 CrossRef
    36. Branzei D, Foiani M. Maintaining genome stability at the replication fork. Nat Rev Mol Cell Biol, 2010, 11: 208-19 CrossRef
    37. Postow L, Crisona NJ, Peter BJ, Hardy CD, Cozzarelli NR. Topological challenges to DNA replication: conformations at the fork. Proc Natl Acad Sci USA, 2001, 98: 8219-226 CrossRef
    38. Mirkin EV, Mirkin SM. Replication fork stalling at natural impediments. Microbiol Mol Biol Rev, 2007, 71: 13-5 CrossRef
    39. Barlow JH, Faryabi RB, Callén E, Wong N, Malhowski A, Chen HT, Gutierrez-Cruz G, Sun HW, McKinnon P, Wright G, Casellas R, Robbiani DF, Staudt L, Fernandez-Capetillo O, Nussenzweig A. Identification of early replicating fragile sites that contribute to genome instability. Cell, 2013, 152: 620-32 CrossRef
    40. Durkin SG, Glover TW. Chromosome fragile sites. Annu Rev Genet, 2007, 41: 169-92 CrossRef
    41. Casper AM, Nghiem P, Arlt MF, Glover TW. ATR regulates fragile site stability. Cell, 2002, 111: 779-89 CrossRef
    42. Azvolinsky A, Giresi PG, Lieb JD, Zakian VA. Highly transcribed RNA polymerase II genes are impediments to replication fork progression in / Saccharomyces cerevisiae. Mol Cell, 2009, 34: 722-34 CrossRef
    43. Wright JA, Chan AK, Choy BK, Hurta RA, McClarty GA, Tagger AY. Regulation and drug resistance mechanisms of mammalian ribonucleotide reductase, and the significance to DNA synthesis. Biochem Cell Biol, 1990, 68: 1364-371 CrossRef
    44. Wyatt MD, Pittman DL. Methylating agents and DNA repair responses: methylated bases and sources of strand breaks. Chem Res Toxicol, 2006, 19: 1580-594 CrossRef
    45. Sogo JM, Lopes M, Foiani M. Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects. Science, 2002, 297: 599-02 CrossRef
    46. Fersht N, Hermand D, Hayles J, Nurse P. Cdc18/CDC6 activates the Rad3-dependent checkpoint in the fission yeast. Nucleic Acids Res, 2007, 35: 5323-337 CrossRef
    47. Hermand D, Nurse P. Cdc18 enforces long-term maintenance of the S phase checkpoint by anchoring the Rad3-Rad26 complex to chromatin. Mol Cell, 2007, 26: 553-63 CrossRef
    48. D’Urso G, Grallert B, Nurse P. DNA polymerase alpha, a component of the replication initiation complex, is essential for the checkpoint coupling S phase to mitosis in fission yeast. J Cell Sci, 1995, 108(Pt 9): 3109-118
    49. Zegerman P, Diffley JF. Checkpoint-dependent inhibition of DNA replication initiation by Sld3 and Dbf4 phosphorylation. Nature, 2010, 467: 474-78 CrossRef
    50. Hu J, Sun L, Shen F, Chen Y, Hua Y, Liu Y, Zhang M, Hu Y, Wang Q, Xu W, Sun F, Ji J, Murray JM, Carr AM, Kong D. The intra-S phase checkpoint targets Dna2 to prevent stalled replication forks from reversing. Cell, 2012, 149: 1221-232 CrossRef
  • 作者单位:LiHong Wu (1)
    Yang Liu (1)
    DaoChun Kong (1)

    1. National Laboratory of Protein and Plant Gene research, College of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, 100871, China
  • ISSN:1869-1889
文摘
Chromosomal DNA replication is one of the central biological events occurring inside cells. Due to its large size, the replication of genomic DNA in eukaryotes initiates at hundreds to tens of thousands of sites called DNA origins so that the replication could be completed in a limited time. Further, eukaryotic DNA replication is sophisticatedly regulated, and this regulation guarantees that each origin fires once per S phase and each segment of DNA gets duplication also once per cell cycle. The first step of replication initiation is the assembly of pre-replication complex (pre-RC). Since 1973, four proteins, Cdc6/Cdc18, MCM, ORC and Cdt1, have been extensively studied and proved to be pre-RC components. Recently, a novel pre-RC component called Sap1/Girdin was identified. Sap1/Girdin is required for loading Cdc18/Cdc6 to origins for pre-RC assembly in the fission yeast and human cells, respectively. At the transition of G1 to S phase, pre-RC is activated by the two kinases, cyclindependent kinase (CDK) and Dbf4-dependent kinase (DDK), and subsequently, RPA, primase-polα, PCNA, topoisomerase, Cdc45, polδ, and pol? are recruited to DNA origins for creating two bi-directional replication forks and initiating DNA replication. As replication forks move along chromatin DNA, they frequently stall due to the presence of a great number of replication barriers on chromatin DNA, such as secondary DNA structures, protein/DNA complexes, DNA lesions, gene transcription. Stalled forks must require checkpoint regulation for their stabilization. Otherwise, stalled forks will collapse, which results in incomplete DNA replication and genomic instability. This short review gives a concise introduction regarding the current understanding of replication initiation and replication fork stabilization.

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