Identification and engineering of regulation-related genes toward improved kasugamycin production
详细信息    查看全文
  • 作者:Chenchen Zhu ; Qianjin Kang ; Linquan Bai
  • 关键词:Streptomyces ; Antibiotic ; Kasugamycin ; Regulation ; Genetic engineering
  • 刊名:Applied Microbiology and Biotechnology
  • 出版年:2016
  • 出版时间:February 2016
  • 年:2016
  • 卷:100
  • 期:4
  • 页码:1811-1821
  • 全文大小:1,033 KB
  • 参考文献:Baron RA, Casey PJ (2004) Analysis of the kinetic mechanism of recombinant human isoprenylcysteine carboxylmethyltransferase (ICMT). BMC Biochem 5:19PubMedCentral CrossRef PubMed
    Berdy J (2005) Bioactive microbial metabolites. J Antibiot 58(1):1–26CrossRef PubMed
    Bibb MJ (2005) Regulation of secondary metabolism in Streptomycetes. Curr Opin Microbiol 8(2):208–15CrossRef PubMed
    Brown NL, Stoyanov JV, Kidd SP, Hobman JL (2003) The MerR family of transcriptional regulators. FEMS Microbiol Lett 27(2–3):145–163CrossRef
    Chater KF (2006) Streptomyces inside-out: a new perspective on the bacteria that provide us with antibiotics. Philos T R Soc B Biological Sci 361(1469):761–8CrossRef
    Chater KF, Chandra G (2008) The use of the rare UUA codon to define "expression space" for genes involved in secondary metabolism, development and environmental adaptation in Streptomyces. J Microbiol 46(1):1–11CrossRef PubMed
    Cheng L, Chen W, Zhai L, Xu D, Huang T, Lin S, Zhou X, Deng Z (2011) Identification of the gene cluster involved in muraymycin biosynthesis from Streptomyces sp. NRRL 30471. Mol BioSyst 7(3):920–7CrossRef PubMed
    Dong L, Nakashima N, Tamura N, Tamura T (2004) Isolation and characterization of the Rhodococcus opacus thiostrepton-inducible genes tipAL and tipAS: application for recombinant protein expression in Rhodococcus. FEMS Microbiol Lett 237(1):35–40CrossRef PubMed
    Flatt PM, Mahmud T (2007) Biosynthesis of aminocyclitol-aminoglycoside antibiotics and related compounds. Nat Prod Rep 24(2):358–92CrossRef PubMed
    Gust B, Challis GL, Fowler K, Kieser T, Chater KF (2003) PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin. Proc Natl Acad Sci U S A 100(4):1541–6PubMedCentral CrossRef PubMed
    Higo A, Horinouchi S, Ohnishi Y (2011) Strict regulation of morphological differentiation and secondary metabolism by a positive feedback loop between two global regulators AdpA and BldA in Streptomyces griseus. Mol Microbiol 81(6):1607–22CrossRef PubMed
    Hotta K, Ogata T, Ishikawa J, Okanishi M, Mizuno S, Morioka M, Naganawa H, Okami Y (1996) Mechanism of multiple aminoglycoside resistance of kasugamycin-producing Streptomyces kasugaensis MB273: involvement of two types of acetyltransferases in resistance to astromicin group antibiotics. J Antibiot 49(7):682–8CrossRef PubMed
    Huang J, Shi J, Molle V, Sohlberg B, Weaver D, Bibb MJ, Karoonuthaisiri N, Lih CJ, Kao CM, Buttner MJ, Cohen SN (2005) Cross-regulation among disparate antibiotic biosynthetic pathways of Streptomyces coelicolor. Mol Microbiol 58:1276–87CrossRef PubMed
    Hwang KS, Kim HU, Charusanti P, Palsson BO, Lee SY (2014) Systems biology and biotechnology of Streptomyces species for the production of secondary metabolites. Biotechnol Adv 32(2):255–68CrossRef PubMed
    Ikeno S, Aoki D, Hamada M, Hori M, Tsuchiya KS (2006) DNA sequencing and transcriptional analysis of the kasugamycin biosynthetic gene cluster from Streptomyces kasugaensis M338-M1. J Antibiot 59(1):18–28CrossRef PubMed
    Ikeno S, Aoki D, Sato K, Hamada M, Hori M, Tsuchiya KS (2002) kasT gene of Streptomyces kasugaensis M338-M1 encodes a DNA-binding protein which binds to intergenic region of kasU-kasJ in the kasugamycin biosynthesis gene cluster. J Antibiot 55(12):1053–62CrossRef PubMed
    Ikeno S, Higashide K, Kinoshita N, Hamada M, Hori M (1998) A 7.6-kb DNA region from Streptomyces kasugaensis M338-M1 includes some genes responsible for kasugamycin biosynthesis. J Antibiot 51:341–52CrossRef PubMed
    Ikeno S, Ohishi Y, Kinoshita N, Hamada M, Tsuchiya KS, Hori M (2000) ABC transporter genes, kasKLM, responsible for self-resistance of a kasugamycin producer strain. J Antibiot 53:373–84CrossRef PubMed
    Kaberdina AC, Szaflarski W, Nierhaus KH, Moll I (2009) An unexpected type of ribosomes induced by kasugamycin: a look into ancestral times of protein synthesis. Mol Cell 33(2):227–36PubMedCentral CrossRef PubMed
    Kojima I, Kasuga K, Kobayashi M, Fukasawa A, Mizuno S, Arisawa A, Akagawa H (2002) The rpoZ gene, encoding the RNA polymerase omega subunit, is required for antibiotic production and morphological differentiation in Streptomyces kasugaensis. J Bacteriol 184(23):6417–23PubMedCentral CrossRef PubMed
    Komatsu M, Komatsu K, Koiwai H, Yamada Y, Kozone I, Izumikawa M, Hashimoto J, Takagi M, Omura S, Shin-ya K, Cane DE, Ikeda H (2013) Engineered Streptomyces avermitilis host for heterologous expression of biosynthetic gene cluster for secondary metabolites. ACS Synth Biol 2(7):384–96PubMedCentral CrossRef PubMed
    Leung KF, Baron R, Ali BR, Magee AI, Seabra MC (2007) Rab GTPases containing a CAAX motif are processed post-geranylgeranylation by proteolysis and methylation. J Biol Chem 282(2):1487–97CrossRef PubMed
    Liu G, Chater KF, Chandra G, Niu G, Tan H (2013) Molecular regulation of antibiotic biosynthesis in Streptomyces. Microbiol Mol Biol Rev 77:112–43PubMedCentral CrossRef PubMed
    Martin JF, Liras P (2010) Engineering of regulatory cascades and networks controlling antibiotic biosynthesis in Streptomyces. Curr Opin Microbiol 13(3):263–73CrossRef PubMed
    Olano C, Lombo F, Mendez C, Salas JA (2008) Improving production of bioactive secondary metabolites in actinomycetes by metabolic engineering. Metab Eng 10(5):281–92CrossRef PubMed
    Paget MS, Chamberlin L, Atrih A, Foster SJ, Buttner MJ (1999) Evidence that the extracytoplasmic function sigma factor σE is required for normal cell wall structure in Streptomyces coelicolor A3(2). J Bacteriol 181(1):204–11PubMedCentral PubMed
    Qiu J, Zhuo Y, Zhu D, Zhou X, Zhang L, Bai L, Deng Z (2011) Overexpression of the ABC transporter AvtAB increases avermectin production in Streptomyces avermitilis. Appl Microbiol Biotechnol 92(2):337–45CrossRef PubMed
    Santos BF, Rodriguez GA, Sola LA, Martin JF (2009) Cross-talk between two global regulators in Streptomyces: PhoP and AfsR interact in the control of afsS, pstS and phoRP transcription. Mol Microbiol 72(1):53–68CrossRef
    Sola LA, Moura RS, Martin JF (2003) The two-component PhoR-PhoP system controls both primary metabolism and secondary metabolite biosynthesis in Streptomyces lividans. Proc Natl Acad Sci U S A 100:6133–8CrossRef
    Sola LA, Rodriguez GA, Amin R, Wohlleben W, Martin JF (2013) Competition between the GlnR and PhoP regulators for the glnA and amtB promoters in Streptomyces coelicolor. Nucleic Acids Res 41:1767–82CrossRef
    Tomono A, Tsai Y, Yamazaki H, Ohnishi Y, Horinouchi S (2005) Transcriptional control by A-factor of strR, the pathway-specific transcriptional activator for streptomycin biosynthesis in Streptomyces griseus. J Bacteriol 187(16):5595–604PubMedCentral CrossRef PubMed
    Wang R, Mast Y, Wang J, Zhang W, Zhao G, Wohlleben W, Lu Y, Jiang W (2013) Identification of two-component system AfsQ1/Q2 regulon and its cross-regulation with GlnR in Streptomyces coelicolor. Mol Microbiol 87(1):30–48CrossRef PubMed
    Wilkinson CJ, Hughes T, Martin CJ, Bohm I, Mironenko T, Deacon M, Wheatcroft M, Wirtz G, Staunton J, Leadlay PF (2002) Increasing the efficiency of heterologous promoters in actinomycetes. J Mol Microbiol Biotechnol 4(4):417–426PubMed
    Yang J, Kulkarni K, Manolaridis I, Zhang Z, Dodd RB, Mas DC, Barford D (2011) Mechanism of isoprenylcysteine carboxyl methylation from the crystal structure of the integral membrane methyltransferase ICMT. Mol Cell 44(6):997–1004CrossRef PubMed
    Yu Z, Zhu H, Dang F, Zhang W, Qin Z, Yang S, Tan H, Lu Y, Jiang W (2012) Differential regulation of antibiotic biosynthesis by DraR-K, a novel two-component system in Streptomyces coelicolor. Mol Microbiol 85(3):535–56CrossRef PubMed
    Zhao Y, Xiang S, Dai X, Yang K (2013) A simplified diphenylamine colorimetric method for growth quantification. Appl Microbiol Biotechnol 97:5069–77CrossRef PubMed
  • 作者单位:Chenchen Zhu (1)
    Qianjin Kang (1)
    Linquan Bai (1)
    Lin Cheng (2)
    Zixin Deng (1) (2)

    1. State Key Laboratory of Microbial Metabolism, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, People’s Republic of China
    2. School of Pharmaceutical Sciences, Wuhan University, Wuhan, 430071, People’s Republic of China
  • 刊物类别:Chemistry and Materials Science
  • 刊物主题:Chemistry
    Biotechnology
    Microbiology
    Microbial Genetics and Genomics
  • 出版者:Springer Berlin / Heidelberg
  • ISSN:1432-0614
文摘
Kasugamycin, produced by Streptomyces kasugaensis and Streptomyces microaureus, is an important amino-glycoside family antibiotic and widely used for veterinary and agricultural applications. In the left flanking region of the previously reported kasugamycin gene cluster, four additional genes (two-component system kasW and kasX, MerR-family kasV, and isoprenylcysteine carboxyl methyltransferase kasS) were identified both in the low-yielding S. kasugaensis BCRC12349 and high-yielding S. microaureus XM301. Deletion of regulatory gene kasT abolished kasugamycin production, and its overexpression in BCRC12349 resulted in an increased titer by 186 %. Deletion of kasW, kasX, kasV, and kasS improved kasugamycin production by 12, 19, 194, and 22 %, respectively. qRT-PCR analysis demonstrated that the transcription of kas genes was significantly increased in all the four mutants. Similar gene inactivation was performed in the high-yielding strain S. microaureus XM301. As expected, the deletion of kasW/X resulted in a 58 % increase of the yield from 6 to 9.5 g/L. However, the deletion of kasV and over-expression of kasT had no obvious effect, and the disruption of kasS surprisingly decreased kasugamycin production. In addition, trans-complementation of the kasS mutant with a TTA codon-mutated kasS increased the kasugamycin yield by 20 %. A much higher transcription of kas genes was detected in the high-yielding XM301 than in the low-yielding BCRC12349, which may partially account for the discrepancy of gene inactivation effects between them. Our work not only generated engineered strains with improved kasugamycin yield, but also pointed out that different strategies on manipulating regulatory-related genes should be considered for low-yielding or high-yielding strains. Keywords Streptomyces Antibiotic Kasugamycin Regulation Genetic engineering

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700