Phylogenetic analysis of Festuca᾿em>Lolium complex using SRAP markers
详细信息 查看全文
- 作者：Yajuan Cheng ; Xiao Ma ; Kai Zhou ; Mike W. Humphreys…
- 关键词：Festuca ; Lolium ; Genetic diversity ; Phylogeny ; SRAP
- 刊名：Genetic Resources and Crop Evolution
- 出版年：2016
- 出版时间：January 2016
- 年：2016
- 卷：63
- 期：1
- 页码：7-18
- 全文大小：883 KB
- 参考文献：Alexeev E (1986) Festuca L. (Poaceae) in Venezuela, Colombia et Ecuador. Novosti Sist. vyssh. Rast 23:5–23
Borrill M, Kirby M, Morgan WG (1980) Studies in Festuca 12. Morphology, distribution and cytogenetics of F. donax, F. scariosa and their hybrids, and the evolutionary significance of their fertile amphiploid derivative. New Phytol 86:423–439CrossRef
Budak H, Shearman R, Parmaksiz I, Dweikat I (2004) Comparative analysis of seeded and vegetative biotype buffalograsses based on phylogenetic relationship using ISSRs, SSRs, RAPDs, and SRAPs. Theor Appl Genet 109:280–288PubMed CrossRef
Cai H, Stewart A, Inoue M, Yuyama N, Hirata M (2011) Lolium. In: Kole C (ed) Wild crop relatives: genomic and breeding resources. Springer, pp 165–173
Catalán P, Torrecilla P, Rodríguez JÁL, Olmstead RG (2004) Phylogeny of the festucoid grasses of subtribe Loliinae and allies (Poeae, Pooideae) inferred from ITS and trnL–F sequences. Mol Phylogenet Evol 31:517–541PubMed CrossRef
Catalán P, Torrecilla P, López-Rodríguez JA, Müller J, Stace CA (2007) A systematic approach to subtribe Loliinae (Poaceae: Pooideae) based on phylogenetic evidence. Aliso: J Syst Evol Bot 23:380–405CrossRef
Chandrasekharan P, Thomas H (1971) Studies in Festuca. 5. Cytogenetic relationships between species of Bovinae and Scariosae. Zeitschr. für Pflanzenzüchtung 65:353–354
Charmet G, Ravel C, Balfourier F (1997) Phylogenetic analysis in the Festuca–Lolium complex using molecular markers and ITS rDNA. Theor Appl Genet 94:1038–1046CrossRef
Clayton WD, Renvoize SA (1986) Genera graminum. Grasses of the world. Kew bulletin additional series XIII. Royal Botanical Gardens, Kew, pp 1–389
Darbyshire SJ (1993) Realignment of Festuca subgenus Schedonorus with the genus Lolium (Poaceae). Novon 3:239–243CrossRef
Darbyshire SJ, Warwick SI (1992) Phylogeny of North American Festuca (Poaceae) and related genera using chloroplast DNA restriction site variation. Can J Bot 70:2415–2429CrossRef
Dice LR (1945) Measures of the amount of ecologic association between species. Ecology 26:297–302CrossRef
Doyle J (1991) DNA protocols for plants. In: Hewitt GM, Johnston AW, Young JPW (eds) Molecular techniques in taxonomy. Springer, Berlin Heidelberg, pp 283–293
Excoffier L (1995) AMOVA 1.55 (analysis of molecular variance). University of Geneva, Geneva
Gaut B, Tredway L, Kubik C, Gaut R, Meyer W (2000) Phylogenetic relationships and genetic diversity among members of the Festuca–Lolium complex (Poaceae) based on ITS sequence data. Plant Syst Evol 224:33–53CrossRef
Ghesquière M, Humphreys MW, Zwierzykowski Z (2010) Festulolium. In: Boller B (ed) Fodder crops and amenity grasses. Springer, pp 288–311
Grisebach A (1852–1853) Gramineae. C. F. Ledebour, Flora rossica 4:324–484
Hackel E (1882) Monographia festucarum europaearum. T. Fischer, Kassel, BerlinCrossRef
Hand ML, Cogan NO, Stewart AV, Forster JW (2010) Evolutionary history of tall fescue morphotypes inferred from molecular phylogenetics of the Lolium–Festuca species complex. BMC Evol Biol 10:303PubMed PubMedCentral CrossRef
Holub J (1998) Reclassifications and new names in vascular plants: 1. Preslia 70:97–122
Humphreys M, Thomas H, Morgan W, Meredith M, Harper J, Thomas H, Zwierzkowski Z, Ghesquiere M (1995) Discriminating the ancestral progenitors of hexaploid Festuca arundinacea using genomic in situ hybridization. Heredity 75:171–174CrossRef
Inda LA, Segarra-Moragues JG, Müller J, Peterson PM, Catalán P (2008) Dated historical biogeography of the temperate Loliinae (Poaceae, Pooideae) grasses in the northern and southern hemispheres. Mol Phylogenet Evol 46:932–957PubMed CrossRef
Lewontin RC (1972) Testing the theory of natural selection. Nature 236:181–182CrossRef
Li G, Quiros CF (2001) Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103:455–461CrossRef
Li G, McVetty PB, Quiros CF (2013) SRAP molecular marker technology in plant science. In: Andersen SB (ed) Plant breeding from laboratories to fields, pp 23–43 doi:10.5772/54511
Liu F, Guo Q-S, Shi H-Z, Wang T, Zhu Z-B (2013) Genetic diversity and phylogenetic relationships among and within populations of Whitmania pigra and Hirudo nipponica based on ISSR and SRAP markers. Biochem Syst Ecol 51:215–223CrossRef
Malik C, Thomas P (1966) Karyotypic studies in some Lolium and Festuca species. Caryologia 19:167–196CrossRef
Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321–3323PubMed PubMedCentral CrossRef
Pasakinskiene I (1998) New molecular evidence on genome relationships and chromosome identification in fescue (Festuca) and ryegrass (Lolium). Heredity 81:659–665CrossRef
Pavlicek A, Hrda S, Flegr J (1998) Free-tree–freeware program for construction of phylogenetic trees on the basis of distance data and bootstrap/jackknife analysis of the tree robustness. Application in the RAPD analysis of genus Frenkelia. Folia Biol-Prague 45:97–99
Rohlf F (1997) NTSYS-pc 2.1. Numerical taxonomy and multivariate analysis system. Exeter Software, Setauket, NY
Roldàn-Ruiz I, Dendauw J, Van Bockstaele E, Depicker A, De Loose M (2000) AFLP markers reveal high polymorphic rates in ryegrasses (Lolium spp.). Mol Breed 6:125–134CrossRef
Seal A (1983) DNA variation in Festuca. Heredity 50:225–236CrossRef
Sneath PH, Sokal RR (1973) Numerical taxonomy. The principles and practice of numerical classification. WH Freeman, San Fran cisco
Soreng R, Terrell E (1997) Taxonomic notes on Schedonorus, a segregate genus from Festuca or Lolium, with a new nothogenus, ×Schedololium, and new combinations. Phytologia 83:85–88
Soreng R, Davis J, Doyle J (1990) A phylogenetic analysis of chloroplast DNA restriction site variation in Poaceae subfam. Pooideae. Plant Syst Evol 172:83–97CrossRef
Stammers M, Harris J, Evans G, Hayward M, Forster J (1995) Use of random PCR (RAPD) technology to analyse phylogenetic relationships in the Lolium/Festuca complex. Heredity 74:19–27PubMed CrossRef
Talebi M, Kazemi M, Sayed-Tabatabaei BE (2012) Molecular diversity and phylogenetic relationships of Pistacia vera, Pistacia atlantica subsp. mutica and Pistacia khinjuk using SRAP markers. Biochem Syst Ecol 44:179–185CrossRef
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739PubMed PubMedCentral CrossRef
Terrell EE (1968) A taxonomic revision of the genus Lolium, vol 1392. US Dept. of Agriculture
Thomas H, Harper J, Meredith M, Morgan W, King I (1997) Physical mapping of ribosomal DNA sites in Festuca arundinacea and related species by in situ hybridization. Genome 40:406–410PubMed CrossRef
Torrecilla P, Catalán P (2002) Phylogeny of broad-leaved and fine-leaved Festuca lineages (Poaceae) based on nuclear ITS sequences. Syst Bot 27:241–251
Torrecilla P, José-Angel, López-Rodríguez, Catalán P (2004) Phylogenetic relationships of Vulpia and related genera (Poeae, Poaceae) based on analysis of ITS and trnL–F sequences. Ann Mo Bot Gard. pp 124–158
Tzvelev N (2000) Novye kombinatsii taksonov sosudistykh rastenii Combinationes novae taxorum plantarum vascularium). Novosti Sist Vyssh Rast 32:181–185
Uzun A, Yesiloglu T, Tuzcu O, Gulsen O (2009) Genetic diversity and relationships within Citrus and related genera based on sequence related amplified polymorphism markers (SRAPs). Sci Hortic 121:306–312CrossRef
Uzun A, Yesiloglu T, Polat I, Aka-Kacar Y, Gulsen O, Yildirim B, Tuzcu O, Tepe S, Canan I, Anil S (2011) Evaluation of genetic diversity in lemons and some of their relatives based on SRAP and SSR markers. Plant Mol Biol Rep 29:693–701CrossRef
Xu J, Li A, Wang X, Qi J, Zhang L, Zhang G, Su J, Tao A (2013) Genetic diversity and phylogenetic relationship of kenaf (Hibiscus cannabinus L.) accessions evaluated by SRAP and ISSR. Biochem Syst Ecol 49:94–100CrossRef
Yaneshita M, Ohmura T, Sasakuma T, Ogihara Y (1993) Phylogenetic relationships of turfgrasses as revealed by restriction fragment analysis of chloroplast DNA. Theor Appl Genet 87:129–135PubMed CrossRef
Yeh F, Rongcal Y, Boyle T (2000) POPGENE 1.32: a free program for the analysis of genetic variation among and within populations using co-dominant and dominant markers. Depart Renewable Resources Univ Alberta, Canada
Zhang FM (2001) DCFA1.1, a program accompanied by AMOVA to compute the matrix of distance. Laboratory Systematic and Evolutionary Botany, Institute of Botany, The Chinese Academy of Science, Beijing - 作者单位：Yajuan Cheng (1)
Xiao Ma (1)
Kai Zhou (1)
Mike W. Humphreys (2)
Xin Quan Zhang (1)
1. Department of Grassland Science, Animal Science and Technology College, Sichuan Agricultural University, Chengdu, 611130, People’s Republic of China
2. Institute of Grassland and Environmental Research, Plas Gogerddan, Aberystwyth, SY23 3EB, UK - 刊物类别：Biomedical and Life Sciences
- 刊物主题：Life Sciences
Plant Sciences
Plant Physiology
Plant Pathology - 出版者：Springer Netherlands
- ISSN：1573-5109
文摘
The Lolium and Festuca genera have been treated as the most important groupings of temperate grasses in forage production and the turf industry. The two genera undoubtedly represent a closely allied complex of related species. The objective of this study was to obtain an overview of the diversity and genetic relationships among 59 accessions of 32 species of the Lolium–Festuca complex using sequence related amplified polymorphism (SRAP) markers. In total, 22 primer combinations amplified 269 polymorphic bands which were detected with an average of 12.23 alleles per SRAP locus. The average polymorphic rate (P) between the species studied was 100 %, demonstrating their high degree of genetic diversity. According to the POPGENE and AMOVA analyses, the inter-genera diversity and the variance between the two genera were both under 50 %. The dendrograms derived either by NTSYS or MEGA in addition to the PCO were consistent and clearly illustrated the relationships among representatives of the Lolium genus as well as the subgenus Festuca, Schedonorus and Leucopoa within the Festuca genus. The result of this study strongly supported the previous morphological separation into a “broad leaved” and “fine-leaved” clades, and it once again demonstrated the close relationship between the Lolium genus and the Schedonorus subgenus. This study also suggested the inclusion of F. mairei in subg. Schedonorus and to divide subgenus Leucopoa by moving sect. Leucopoa and sect. Breviaristatae into different subgenera. The analysis method described provides new methodologies for determining the phylogeny of these outbreeding species.