Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses
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  • 作者:Karen Siu-Ting (21) (22)
    David J Gower (23)
    Davide Pisani (21) (22)
    Roman Kassahun (24)
    Fikirte Gebresenbet (25)
    Michele Menegon (26)
    Abebe A Mengistu (27)
    Samy A Saber (28)
    Rafael de S谩 (29)
    Mark Wilkinson (23)
    Simon P Loader (27)

    21. Molecular Evolution and Bioinformatics Lab
    ; National University of Ireland ; Maynooth ; Co. Kildare ; Ireland
    22. School of Biological Sciences and School of Earth Sciences
    ; Woodland Road ; Bristol ; BS8 1UG ; UK
    23. Department of Life Sciences
    ; The Natural History Museum ; Cromwell Road ; London ; SW7 5BD ; UK
    24. Ethiopian Wildlife Conservation Authority
    ; P.O. Box 386 ; Addis Ababa ; Ethiopia
    25. Department of Zoology
    ; Oklahoma State University ; 311 D Life Sciences West ; Stillwater ; OK ; 74078 ; USA
    26. Tropical Biodiversity section
    ; MUSE - Museo delle Scienze di Trento ; Viale del Lavoro e della Scienza 3 ; Trento ; 38123 ; Italy
    27. Department of Environmental Sciences
    ; University of Basel ; Biogeography Research Group ; Basel ; 4056 ; Switzerland
    28. Zoology Department
    ; Faculty of Science ; Al-Azhar University ; Assiut ; Egypt
    29. Department of Biology
    ; University of Richmond ; Richmond ; VA ; 23173 ; USA
  • 关键词:Africa ; Amphibia ; Eastern Afromontane ; Ethiopia ; Petropedetes ; phylogenetics
  • 刊名:BMC Evolutionary Biology
  • 出版年:2014
  • 出版时间:December 2014
  • 年:2014
  • 卷:14
  • 期:1
  • 全文大小:2,567 KB
  • 参考文献:1. Hillman, JC (1988) The Bale Mountains National Park area, southeast Ethiopia, and its management. Mt Res Dev 8: pp. 253-258 CrossRef
    2. Largen, MJ (2001) Catalogue of the amphibians of Ethiopia, including a key for their identification. Trop Zool 14: pp. 307-402 CrossRef
    3. Largen, MJ, Drewes, RC (1989) A new genus and species of brevicpitine frog (Amphibia Anura Microhylidae) from high altitude in the mountains of Ethiopia. Trop Zool 2: pp. 13-30 CrossRef
    4. Gower, DJ, Aberra, RK, Schwaller, S, Largen, MJ, Collen, B, Spawls, S, Menegon, M, Zimkus, BM, De S谩, R, Mengistu, A (2013) Long-term data for endemic frog genera reveal potential conservation crisis in the Bale Mountains. Ethiopia. Oryx 47: pp. 56-59
    5. Largen, MJ (1991) A new genus and species of petropedatine frog (Amphibia Anura Ranidae) from high altitude in the mountains of Ethiopia. Trop Zool 4: pp. 139-152 CrossRef
    6. Frost, DR, Grant, T, Faivovich, J, Bain, RH, Haas, A, Haddad, CF, De S谩, RO, Channing, A, Wilkinson, M, Donnellan, SC (2006) The amphibian tree of life. Bull Am Mus Nat Hist 297: pp. 1-291 CrossRef
    7. Dubois, A (1992) Notes sur la classification des Ranidae (Amphibiens Anoures). Bull Mens Soc Linn Lyon 61: pp. 305-352
    8. Dubois, A (2005) Amphibia Mundi. 1.1. An ergotaxonomy of recent amphibians. Alytes 23: pp. 1-24
    9. Scott, E (2005) A phylogeny of ranid frogs (Anura: Ranoidea: Ranidae), based on a simultaneous analysis of morphological and molecular data. Cladistics 21: pp. 507-574 CrossRef
    10. Pyron, AR, Wiens, JJ (2011) A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians. Mol Phylogenet Evol 61: pp. 543-583 CrossRef
    11. Gower, DJ, Doherty-Bone, TM, Aberra, RK, Mengistu, A, Schwaller, S, Menegon, M, De S谩, R, Saber, SA, Cunningham, AA, Loader, SP (2012) High prevalence of the amphibian chytrid fungus (Batrachochytrium dendrobatidis) across multiple taxa and localities in the highlands of Ethiopia. Herpetol J 22: pp. 225-233
    12. White, F The Afromontane Region. In: Werger, MJA eds. (1978) Biogeography and Ecology of Southern Africa. Springer Netherlands, The Hague, pp. 463-513 CrossRef
    13. Isaac, NJB, Redding, DW, Meredith, HM, Safi, K (2012) Phylogenetically-Informed Priorities for Amphibian Conservation. PLoS ONE 7: pp. e43912 CrossRef
    14. Ericabatrachus baleensis: / IUCN Red List of threatened species. Version 2013.1. http://www.iucnredlist.org/
    15. Blackburn, D, Wake, D (2011) Class Amphibia Gray, 1825. Animal biodiversity: An outline of higher-level classification and survey of taxonomic richness Zootaxa 3148: pp. 39-55
    16. Grandison, AGC (1978) The occurrence of Nectophrynoides (Anura: Bufonidae) in Ethiopia. A new concept of the genus with a description of a new species. Monit Zool Ital 11: pp. 119-172
    17. Loader, SP, Ceccarelli, FS, Menegon, M, Howell, KM, Kassahun, R, Mengistu, A, Saber, SA, Gebresenbet, F, De S谩, R, Davenport, TB (2014) Persistence and stability of Eastern Afromontane forests: evidence from brevicipitid frogs. J Biogeogr.
    18. Barej, MF, R枚del, MO, Loader, SP, Menegon, M, Gonwouo, NL, Penner, J, Gvo啪d铆k, V, G眉nther, R, Bell, RC, Nagel, P (2014) Light shines through the spindrift 鈥?phylogeny of African Torrent Frogs (Amphibia, Anura, Petropedetidae). Mol Phylogenet Evol 71: pp. 261-273 CrossRef
    19. Roelants, K, Gower, DJ, Wilkinson, M, Loader, SP, Biju, S, Guillaume, K, Moriau, L, Bossuyt, F (2007) Global patterns of diversification in the history of modern amphibians. Proc Natl Acad Sci USA 104: pp. 887-892 CrossRef
    20. van der Meijden, A, Vences, M, Hoegg, S, Meyer, A (2005) A previously unrecognized radiation of ranid frogs in Southern Africa revealed by nuclear and mitochondrial DNA sequences. Mol Phylogenet Evol 37: pp. 674-685 CrossRef
    21. Rota-Stabelli, O, Campbell, L, Brinkmann, H, Edgecombe, GD, Longhorn, SJ, Peterson, KJ, Pisani, D, Philippe, H, Telford, MJ (2011) A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata. Proc R Soc B 278: pp. 298-306 CrossRef
    22. Rota-Stabelli, O, Lartillot, N, Philippe, H, Pisani, D (2013) Serine codon-usage bias in deep phylogenomics: pancrustacean relationships as a case study. Syst Biol 62: pp. 121-133 CrossRef
    23. Sperling, EA, Peterson, KJ, Pisani, D (2009) Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa. Mol Biol Evol 26: pp. 2261-2274 CrossRef
    24. Zhang, P, Liang, D, Mao, R-L, Hillis, DM, Wake, DB, Cannatella, DC (2013) Efficient Sequencing of Anuran mtDNAs and a Mitogenomic Exploration of the Phylogeny and Evolution of Frogs. Mol Biol Evol 30: pp. 1899-1915 CrossRef
    25. Miehe, S, Miehe, G (1994) Ericaceous forests and heathlands in the Bale Mountains of South Ethiopia. Hamburg, Germany, Stiftung walderhaltung in Afrika and Bundesforschungsansalt f眉r Forst- und Holzwirtschaft
    26. Tamura, K, Peterson, D, Peterson, N, Stecher, G, Nei, M, Kumar, S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: pp. 2731-2739 CrossRef
    27. Edgar, RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: pp. 1792-1797 CrossRef
    28. Mallatt, J, Craig, CW, Yoder, MJ (2010) Nearly complete rRNA genes assembled from across the metazoan animals: Effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction. Mol Phylogenet Evol 55: pp. 1-17 CrossRef
    29. Waterhouse, AM, Procter, JB, Martin, DM, Clamp, M, Barton, GJ (2009) Jalview Version 2鈥攁 multiple sequence alignment editor and analysis workbench. Bioinformatics 25: pp. 1189-1191 CrossRef
    30. Fourment, M, Gibbs, MJ (2006) PATRISTIC: a program for calculating patristic distances and graphically comparing the components of genetic change. BMC Evol Biol 6: pp. 1 CrossRef
    31. Stamatakis, A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: pp. 2688-2690 CrossRef
    32. Lanfear, R, Calcott, B, Ho, SY, Guindon, S (2012) PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol 29: pp. 1695-1701 CrossRef
    33. Lartillot, N, Lepage, T, Blanquart, S (2009) PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 25: pp. 2286-2288 CrossRef
    34. Letunic, I, Bork, P (2011) Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39: pp. W475-W478 CrossRef
    35. Shimodaira, H, Hasegawa, M (2001) CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: pp. 1246-1247 CrossRef
  • 刊物主题:Evolutionary Biology; Animal Systematics/Taxonomy/Biogeography; Entomology; Genetics and Population Dynamics; Life Sciences, general;
  • 出版者:BioMed Central
  • ISSN:1471-2148
文摘
Background The phylogenetic relationships of many taxa remain poorly known because of a lack of appropriate data and/or analyses. Despite substantial recent advances, amphibian phylogeny remains poorly resolved in many instances. The phylogenetic relationships of the Ethiopian endemic monotypic genus Ericabatrachus has been addressed thus far only with phenotypic data and remains contentious. Results We obtained fresh samples of the now rare and Critically Endangered Ericabatrachus baleensis and generated DNA sequences for two mitochondrial and four nuclear genes. Analyses of these new data using de novo and constrained-tree phylogenetic reconstructions strongly support a close relationship between Ericabatrachus and Petropedetes, and allow us to reject previously proposed alternative hypotheses of a close relationship with cacosternines or Phrynobatrachus. Conclusions We discuss the implications of our results for the taxonomy, biogeography and conservation of E. baleensis, and suggest a two-tiered approach to the inclusion and analyses of new data in order to assess the phylogenetic relationships of previously unsampled taxa. Such approaches will be important in the future given the increasing availability of relevant mega-alignments and potential framework phylogenies.

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