Genetic mapping of paternal sorting of mitochondria in cucumber
详细信息    查看全文
  • 作者:Claudia I. Calderon (1)
    Brian S. Yandell (1)
    Michael J. Havey (2)
  • 刊名:Theoretical and Applied Genetics
  • 出版年:2012
  • 出版时间:June 2012
  • 年:2012
  • 卷:125
  • 期:1
  • 页码:11-18
  • 全文大小:304KB
  • 参考文献:1. Abdelnoor RV, Yule R, Elo A, Christensen AC, Meyer-Gauen G, Mackenzie SA (2003) Substoichiometric shifting in the plant mitochondrial genome is influenced by a gene homologous to MutS. Proc Natl Acad Sci (USA) 100:5968鈥?973 CrossRef
    2. Al-Faifi S, Meyer J, Garcia-Mas J, Monforte A, Havey M (2008) Exploiting synteny in / Cucumis for mapping of / Psm: a unique locus controlling paternal mitochondrial sorting. Theor Appl Genet 117:523鈥?29 CrossRef
    3. Alverson AJ, Rice DW, Dickinson S, Barry K, Palmer JD (2011) Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber. Plant Cell 23:2499鈥?513 CrossRef
    4. Arrieta-Montiel MP, Shedge V, Davila J, Christensen AC, Mackenzie SA (2009) Diversity of the / Arabidopsis mitochondrial genome occurs via nuclear-controlled recombination activity. Genetics 183:1261鈥?268 CrossRef
    5. Bartoszewski G, Malepszy S, Havey MJ (2004) Mosaic (MSC) cucumbers regenerated from independent cell cultures possess different mitochondrial rearrangements. Curr Genet 45:45鈥?3 CrossRef
    6. Broman KW, Sen S (2009) A guide to QTL mapping with R/qtl. Springer, New York CrossRef
    7. Castelo AT, Martins W, Gao GR (2002) TROLL-tandem repeat occurrence locator. Bioinformatics 18:634鈥?36 CrossRef
    8. Chat J, Chalak L, Petit RJ (1999) Strict paternal inheritance of chloroplast DNA and maternal inheritance of mitochondrial DNA in interspecific crosses of kiwifruit. Theor Appl Genet 99:314鈥?22 CrossRef
    9. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963鈥?71
    10. Dijkhuizen A, Kennard WC, Havey MJ, Staub JE (1996) RFLP variation and genetic relationships in cultivated cucumber. Euphytica 90:79鈥?7
    11. Faur茅 S, Noyer J-L, Carreel F, Horry J-P, Bakry F, Lanaud C (1994) Maternal inheritance of chloroplast genome and paternal inheritance of mitochondrial genome in bananas ( / Musa acuminata). Curr Genet 25:265鈥?69 CrossRef
    12. Fauron CM-R, Moore B, Casper M (1995) Maize as a model of higher plant mitochondrial genome plasticity. Plant Sci 112:11鈥?2 CrossRef
    13. Fujii S, Toriyama K (2008) Genome barriers between nuclei and mitochondria exemplified by cytoplasmic male sterility. Plant Cell Physiol 49:1484鈥?494 CrossRef
    14. Gillham NW (1994) Organelle genes and genomes. Oxford University Press, New York
    15. Havey MJ (1997) Predominant paternal transmission of the mitochondrial genome in cucumber. J Hered 88:232鈥?35 CrossRef
    16. Havey MJ, McCreight JD, Rhodes B, Taurick G (1998) Differential transmission of the / Cucumis organellar genomes. Theor Appl Genet 97:122鈥?28 CrossRef
    17. Havey MJ, Park YH, Bartoszewski G (2004) The / Psm locus controls paternal sorting of the cucumber mitochondrial genome. J Hered 95:492鈥?97 CrossRef
    18. Huang S, Li R, Zhang Z, Li L, Gu X, Fan W, Lucas WJ, Wang X, Xie B, Ni P, Ren Y, Zhu H, Li J, Lin K, Jin W, Fei Z, Li G, Staub J, Kilian A, van der Vossen EAG, Wu Y, Guo J, He J, Jia Z, Ren Y, Tian G, Lu Y, Ruan J, Qian W, Wang M, Huang Q, Li B, Xuan Z, Cao J, Asan WuZ, Zhang J, Cai Q, Bai Y, Zhao B, Han Y, Li Y, Li X, Wang S, Shi Q, Liu S, Cho WK, Kim J-Y, Xu Y, Heller-Uszynska K, Miao H, Cheng Z, Zhang S, Wu J, Yang Y, Kang H, Li M, Liang H, Ren X, Shi Z, Wen M, Jian M, Yang H, Zhang G, Yang Z, Chen R, Liu S, Li J, Ma L, Liu H, Zhou Y, Zhao J, Fang X, Li G, Fang L, Li Y, Liu D, Zheng H, Zhang Y, Qin N, Li Z, Yang G, Yang S, Bolund L, Kristiansen K, Zheng H, Li S, Zhang X, Yang H, Wang J, Sun R, Zhang B, Jiang S, Wang J, Du Y, Li S (2009) The genome of the cucumber, / Cucumis sativus L. Nat Genet 41:1275鈥?281 CrossRef
    19. Jiang C, Zeng ZB (1995) Multiple trait analysis of genetic mapping for quantitative trait loci. Genetics 140:1111鈥?127
    20. Krysan P (2004) Ice-Cap. A high-throughput method for capturing plant tissue samples for genotype analysis. Plant Physiol 135:1162鈥?169 CrossRef
    21. Lilly J, Havey M (2001) Small, repetitive DNAs contribute significantly to the expanded mitochondrial genome of cucumber. Genetics 159:317鈥?28
    22. Lilly J, Bartoszewski G, Malepszy S, Havey M (2001) A major deletion in the cucumber mitochondrial genome sorts with the MSC phenotype. Curr Genet 40:144鈥?51 CrossRef
    23. Lower RL, Edwards MD (1986) Cucumber breeding. In: Basset MJ (ed) Breeding vegetable crops. AVI Publishing, Westport, pp 173鈥?07
    24. Mader E, Lukas B, Novak J (2008) A strategy to setup codominant microsatellite analysis for high-resolution-melting-curve-analysis (HRM). BMC Genet 9:69 CrossRef
    25. Malepszy S, Burza W, Smiech M (1996) Characterization of a cucumber ( / Cucumis sativus L.) somaclonal variant with paternal inheritance. J Appl Genet 37:65鈥?8
    26. Manly KF, Olson JM (1999) Overview of QTL mapping software and introduction to map manager QT. Mamm Genome 10:327鈥?34 CrossRef
    27. Manly KF, Cudmore RH Jr, Meer JM (2001) Map Manager QTX, cross-platform software for genetic mapping. Mamm Genome 12:930鈥?32 CrossRef
    28. Mar茅chal A, Brisson N (2010) Recombination and the maintenance of plant organelle genome stability. New Phytol 186:299鈥?17 CrossRef
    29. Martinez-Zapater JM, Gil P, Capel J, Somerville CR (1992) Mutations at the / Arabidopsis CHM locus promote rearrangements of the mitochondrial genome. Plant Cell 4:889鈥?99 CrossRef
    30. McCauley DE, Bailey MF, Sherman NA, Darnell MZ (2005) Evidence for paternal transmission and heteroplasmy in the mitochondrial genome of / Silene vulgaris, a gynodioecious plant. Heredity 95:50鈥?8 CrossRef
    31. Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci (USA) 88:9828鈥?832 CrossRef
    32. Neale DB, Sederoff RR (1989) Paternal inheritance of chloroplast DNA and maternal inheritance of mitochondrial DNA in loblolly pine. Theor Appl Genet 77:212鈥?16 CrossRef
    33. Neale DB, Marshall KA, Sederoff RR (1989) Chloroplast and mitochondrial DNA are paternally inherited in / Sequoia sempervirens D. Don Endl. Proc Natl Acad Sci 86:9347鈥?349 CrossRef
    34. Newton KJ (1995) Aberrant growth phenotypes associated with mitochondrial genome rearrangements in higher plants. In: Levings CS III, Vasil IK (eds) The molecular biology of plant mitochondria. Kluwer, Boston, pp 585鈥?96 CrossRef
    35. Odahara M, Kuroiwa H, Kuroiwa T, Sekine Y (2009) Suppression of repeat-mediated gross mitochondrial genome rearrangements by RecA in the moss / Physcomitrella patens. Plant Cell 21:1182鈥?194 CrossRef
    36. Pierce LK, Wehner TC (1990) Review of genes and linkage groups in cucumber. HortScience 25:605鈥?15
    37. Reboud X, Zeyl C (1994) Organelle inheritance in plants. Heredity 72:132鈥?40 CrossRef
    38. Ren Y, Zhang Z, Liu J, Staub JE, Han Y, Cheng Z, Li X, Lu J, Miao H, Kang H, Xie B, Gu X, Wang X, Du Y, Jin W, Huang S (2009) An integrated genetic and cytogenetic map of the cucumber genome. PLoS one 4:e5795 CrossRef
    39. Shedge V, Arrieta-Montiel M, Christensen AC, Mackenzie SA (2007) Plant mitochondrial recombination surveillance requires unusual RecA and MutS homologs. Plant Cell 19:1251鈥?264 CrossRef
    40. Smith SE (1989) Biparental inheritance of organelles and its implications in crop improvement. Plant Breed Rev 6:361鈥?93
    41. Staub JE, Chung SM, Fazio G (2005) Conformity and genetic relatedness estimation in crop species having a narrow genetic base: the case of cucumber ( / Cucumis sativus L.). Plant Breeding 124:44鈥?3 CrossRef
    42. Unseld M, Marienfeld JR, Brandt P, Brennicke A (1997) The mitochondrial genome of / Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat Genet 15:57鈥?1 CrossRef
    43. Wang S, Basten CJ, Zeng ZB (2010) Windows QTL Cartographer 2.5, Department of Statistics, North Carolina State University, Raleigh, NC
    44. Ward B, Anderson R, Bendich A (1981) The mitochondrial genome is large and variable in a family of plants (Cucurbitaceae). Cell 25:793鈥?03 CrossRef
    45. Weihe A, Apitz J, Pohlheim F, Salinas-Hartwig A, B枚rner T (2009) Biparental inheritance of plastidial and mitochondrial DNA and hybrid variegation in / Pelargonium. Mol Genet Genomics 282:587鈥?93 CrossRef
    46. Xu Y-Z, Arrieta-Montiel M, Virdi K, Paula W, Widhaim J, Basset G, Davila J, Elthon T, Elowsky C, Sato S, Clemente T, MacKenzie S (2011) MutS homolog1 is a nucleoid protein that alters mitochondrial and plastid properties and plant response to high light. Plant Cell 23:3426鈥?441 CrossRef
    47. Zaegel V, Guermann B, Le Ret M, Andres C, Meyer D, Erhardt M, Canaday J, Gualberto JM, Imbault P (2006) The plant-specific ssDNA binding protein OSB1 is involved in the stoichiometric transmission of mitochondrial DNA in / Arabidopsis. Plant Cell 18:3548鈥?563 CrossRef
    48. Zeng Z-B (1993) Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc Natl Acad Sci 90:10972鈥?0976 CrossRef
    49. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457鈥?468
    50. Zhang Q, Sodmergen (2003) Cytological evidence for preservation of mitochondrial and plastid DNA in the mature generative cells of / Chlorophytum spp. (Liliaceae). Protoplasma 221:211鈥?16
  • 作者单位:Claudia I. Calderon (1)
    Brian S. Yandell (1)
    Michael J. Havey (2)

    1. Department of Horticulture, University of Wisconsin, Madison, WI, 53706, USA
    2. USDA/ARS, Department of Horticulture, University of Wisconsin, Madison, WI, 53706, USA
  • ISSN:1432-2242
文摘
Mitochondria are organelles that have their own DNA; serve as the powerhouses of eukaryotic cells; play important roles in stress responses, programmed cell death, and ageing; and in the vast majority of eukaryotes, are maternally transmitted. Strict maternal transmission of mitochondria makes it difficult to select for better-performing mitochondria, or against deleterious mutations in the mitochondrial DNA. Cucumber is a useful plant for organellar genetics because its mitochondria are paternally transmitted and it possesses one of the largest mitochondrial genomes among all eukaryotes. Recombination among repetitive motifs in the cucumber mitochondrial DNA produces rearrangements associated with strongly mosaic (MSC) phenotypes. We previously reported nuclear control of sorting among paternally transmitted mitochondrial DNAs. The goal of this project was to map paternal sorting of mitochondria as a step towards its eventual cloning. We crossed single plants from plant introduction (PI) 401734 and Cucumis sativus var. hardwickii and produced an F2 family. A total of 425 F2 plants were genotyped for molecular markers and testcrossed as the female with MSC16. Testcross families were scored for frequencies of wild-type versus MSC progenies. Discrete segregations for percent wild-type progenies were not observed and paternal sorting of mitochondria was therefore analyzed as a quantitative trait. A major quantitative trait locus (QTL; LOD >23) was mapped between two simple sequence repeats encompassing a 459-kb region on chromosome 3. Nuclear genes previously shown to affect the prevalence of mitochondrial DNAs (MSH1, OSB1, and RECA homologs) were not located near this major QTL on chromosome 3. Sequencing of this region from PI 401734, together with improved annotation of the cucumber genome, should result in the eventual cloning of paternal sorting of mitochondria and provide insights about nuclear control of organellar-DNA sorting.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700