Investigation of the bacterial retting community of kenaf (Hibiscus cannabinus) under different conditions using next-generation semiconductor sequencing
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- 作者：David K. Visi (1) (4)
Nandika D’Souza (2)
Brian G. Ayre (4)
Charles L. Webber III (3)
Michael S. Allen (1) (4) - 关键词：Microbial diversity ; Retting ; Semiconductor ; Sequencing ; Bioproducts
- 刊名：Journal of Industrial Microbiology and Biotechnology
- 出版年：2013
- 出版时间：May 2013
- 年：2013
- 卷：40
- 期：5
- 页码：465-475
- 全文大小：512KB
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48. Yu H, Yu C (2007) study on microbe retting of kenaf fiber. Enzyme Microb Technol 40:1806-809 CrossRef - 作者单位：David K. Visi (1) (4)
Nandika D’Souza (2)
Brian G. Ayre (4)
Charles L. Webber III (3)
Michael S. Allen (1) (4)
1. Department of Forensics and Investigative Genetics, University of North Texas Health Science Center, Ft. Worth, TX, 76107, USA
4. Department of Biological Sciences, University of North Texas, Denton, TX, 76203-3677, USA
2. Department of Mechanical and Energy Engineering, University of North Texas, Denton, TX, 76203-3677, USA
3. Sugarcane Research Unit, USDA, ARS, Houma, LA, 70361, USA - ISSN：1476-5535
文摘
The microbial communities associated with kenaf (Hibiscus cannabinus) plant fibers during retting were determined in an effort to identify possible means of accelerating this process for industrial scale-up. Microbial communities were identified by semiconductor sequencing of 16S rRNA gene amplicons from DNA harvested from plant-surface associated samples and analyzed using an Ion Torrent PGM. The communities were sampled after 96?h from each of three different conditions, including amendments with pond water, sterilized pond water, or with a mixture of pectinolytic bacterial isolates. Additionally, plants from two different sources and having different pretreatment conditions were compared. We report that the best retting communities are dominated by members of the order Clostridiales. These bacteria appear to be naturally associated with the plant material, although slight variations between source materials were found. Additionally, heavy inoculations of pectinolytic bacteria established themselves and in addition their presence facilitated the rapid dominance of the original plant-associated Clostridiales. These data suggest that members of the order Clostridiales dominate the community and are most closely associated with efficient and effective retting. The results further suggest that establishment of the community structure is first driven by the switch to anaerobic conditions, and subsequently by possible competition for nitrogen. These findings reveal important bacterial groups involved in fiber retting, and suggest mechanisms for the manipulation of the community and retting efficiency by modifying nutrient availability.