Identification of the chromosomal region responsible for high-temperature stress tolerance during the grain-filling period in rice

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• 作者：Kenta Shirasawa (1) (4)
  Takuma Sekii (1)
  Yoshinori Ogihara (1)
  Teppei Yamada (1)
  Sachiko Shirasawa (1)
  Sachie Kishitani (1)
  Kunihiko Sasaki (2)
  Minoru Nishimura (3)
  Kuniaki Nagano (2)
  Takeshi Nishio (1)
  
• 关键词：QTL ; NILs ; DNA marker ; Marker ; assisted selection ; White ; back grains
• 刊名：Molecular Breeding
• 出版年：2013
• 出版时间：June 2013
• 年：2013
• 卷：32
• 期：1
• 页码：223-232
• 全文大小：317KB
• 参考文献：1. Arai-Kichise Y, Shiwa Y, Nagasaki H, Ebana K, Yoshikawa H, Yano M, Wakasa K (2011) Discovery of genome-wide DNA polymorphisms in a landrace cultivar of / japonica rice by whole-genome sequencing. Plant Cell Physiol 52:274-82 CrossRef
  2. Chiba B, Usuki S, Hayasaka H, Nagano K, Matsunaga K (1998) Selection of extremely cold tolerant rice lines developed by crossing cold parents with diverse origin (in Japanese). Tohoku J Crop Sci 41:17-8
  3. Gordon D, Abajian C, Green P (1998) / Consed: a graphical tool for sequence finishing. Genome Res 8:195-02
  4. He S, Li SG, Qian Q, Ma YQ, Li JZ, Wang WM, Chen Y, Zhu LH (1999) Genetic analysis of rice grain quality. Theor Appl Genet 98:502-08 CrossRef
  5. Iida Y, Yokota K, Kirihara T, Suga R (2002) Comparison of the occurrence of kernel damage in rice plants grown in a heated greenhouse and in a paddy field of high temperature year (in Japanese with English summary). Jpn J Crop Sci 71:174-77 CrossRef
  6. International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436:793-00 CrossRef
  7. Kobayashi A, Bao G, Ye S, Tomita K (2007) Detection of quantitative trait loci for white-back and basal-white kernels under high temperature stress in / japonica rice varieties. Breed Sci 57:107-16 CrossRef
  8. Li J, Xiao J, Grandillo S, Jiang L, Wan Y, Deng Q, Yuan L, McCouch SR (2004) QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian ( / O. sativa L.) and African ( / O. glaberrima S.) rice. Genome 47:697-04 CrossRef
  9. Matsubara K, Kono I, Hori K, Nonoue Y, Ono N, Shomura A, Mizubayashi T, Yamamoto S, Yamanouchi U, Shirasawa K, Nishio T, Yano M (2008) Novel QTLs for photoperiodic flowering unraveled using reciprocal backcross inbred lines from crosses between / japonica rice cultivars. Theor Appl Genet 117:935-45 CrossRef
  10. Matsubara K, Ogiso-Tanaka E, Hori K, Ebana K, Ando T, Yano M (2012) Natural variation in / Hd17, a homolog of / Arabidopsis ELF3 that is involved in rice photoperiodic flowering. Plant Cell Physiol 53:709-16 CrossRef
  11. Matsui T, Kobayashi K, Kagata H, Horie T (2005) Correlation between viability of pollination and length of basal dehiscence of the theca in rice under a hot-and humid condition. Plant Prod Sci 8:109-14 CrossRef
  12. McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Stein L (2002) Development and mapping of 2240 new SSR markers for rice ( / Oryza sativa L.). DNA Res 9:199-07 CrossRef
  13. McNally KL, Bruskiewich R, Mackill D, Buell CR, Leach JE, Leung H (2006) Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes. Plant Physiol 141:26-1 CrossRef
  14. Michaels SD, Amasino RM (1998) A robust method for detecting single-nucleotide changes as polymorphic markers by PCR. Plant J 14:381-85 CrossRef
  15. Monna L, Ohta R, Masuda H, Koike A, Minobe Y (2006) Genome-wide searching of single-nucleotide polymorphisms among eight distantly and closely related rice cultivars ( / Oryza sativa L.) and a wild accession ( / Oryza rufipogon Griff.). DNA Res 13:43-1 CrossRef
  16. Nagato K, Ebata M (1965) Effects of high temperature during ripening period on the development and the quality of rice kernels (in Japanese with English summary). Jpn J Crop Sci 34:59-6 CrossRef
  17. Nishimura M, Kaji R, Ogawa T (2000) Varietal differences in the occurrence of coarse grain due to the high temperature stress given during the ripening period of rice plants (in Japanese with English summary). Breed Res 2:17-2 CrossRef
  18. Satake T, Yoshida S (1978) High temperature-induced sterility in / indica rices at flowering. Jpn J Crop Sci 47:6-7 CrossRef
  19. Shirasawa K, Monna L, Kishitani S, Nishio T (2004a) Single nucleotide polymorphisms in randomly selected genes among / japonica rice ( / Oryza sativa L.) varieties identified by PCR-RF-SSCP. DNA Res 11:275-83 CrossRef
  20. Shirasawa K, Kishitani S, Nishio T (2004b) Conversion of AFLP markers to sequence-specific markers for closely related lines in rice by use of the rice genome sequence. Mol Breed 14:283-92 CrossRef
  21. Shirasawa K, Shiokai S, Yamaguchi M, Kishitani S, Nishio T (2006) Dot-blot-SNP analysis for practical plant breeding and cultivar identification in rice. Theor Appl Genet 113:147-55 CrossRef
  22. Shirasawa K, Maeda H, Monna L, Kishitani S, Nishio T (2007) The number of genes having different alleles between rice cultivars estimated by SNP analysis. Theor Appl Genet 115:1067-074 CrossRef
  23. Tabata M, Iida Y, Ohsawa R (2005) Genetic analysis of occurrence of white-back rice and basal-white rice associated with high temperature during the ripening period of rice (in Japanese with English summary). Breed Res 7:9-5 CrossRef
  24. Tabata M, Hirabayashi H, Takeuchi Y, Ando I, Iida Y, Ohsawa R (2007) Mapping of quantitative trait loci for the occurrence of white-back kernels associated with high temperatures during the ripening period of rice ( / Oryza sativa L.). Breed Sci 57:47-2 CrossRef
  25. Takeuchi Y, Hayasaka H, Chiba B, Tanaka I, Shimano T, Yamagishi M, Nagano K, Sasaki T, Yano M (2001) Mapping quantitative trait loci controlling cool-temperature tolerance at booting stage in temperate / japonica rice. Breed Sci 51:191-97 CrossRef
  26. Tan YF, Xing YZ, Li JX, Yu SB, Xu CG, Zhang Q (2000) Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid. Theor Appl Genet 101:823-29 CrossRef
  27. Wada T, Uchimura Y, Ogata T, Tsubone M, Matsue Y (2006) Mapping of QTLs for physicochemical properties in / japonica rice. Breed Sci 56:253-60 CrossRef
  28. Wan XY, Wan JM, Weng JF, Jiang L, Bi JC, Wang CM, Zhai HQ (2005) Stability of QTLs for rice grain dimension and endosperm chalkiness characteristics across eight environments. Theor Appl Genet 110:1334-346 CrossRef
  29. Wang S, Basten CJ, Zeng ZB (2007) Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh, NC. http://statgen.ncsu.edu/qtlcart/WQTLCart.htm
  30. Yamakawa H, Hakata M (2010) Atlas of rice grain filling-related metabolism under high temperature: joint analysis of metabolome and transcriptome demonstrated inhibition of starch accumulation and induction of amino acid accumulation. Plant Cell Physiol 51:795-09 CrossRef
  31. Yamakawa H, Hirose T, Kuroda M, Yamaguchi T (2007) Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA microarray. Plant Physiol 144:258-77 CrossRef
  32. Yamakawa H, Ebitani T, Terao T (2008) Comparison between locations of QTLs for grain chalkiness and genes responsive to high temperature during filling on the rice chromosome map. Breed Sci 58:337-43 CrossRef
  33. Yamamoto T, Nagasaki H, Yonemaru J, Ebana K, Nakajima M, Shibaya T, Yano M (2010) Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genomics 11:267 CrossRef
  34. Yonemaru J, Ebana K, Yamamoto E, Nagasaki H, Shibaya T, Yano M (2012) Genome-wide haplotype changes produced by artificial selection during modern rice breeding in Japan. PLoS ONE 7:e32982 CrossRef
  
• 作者单位：Kenta Shirasawa (1) (4)
  Takuma Sekii (1)
  Yoshinori Ogihara (1)
  Teppei Yamada (1)
  Sachiko Shirasawa (1)
  Sachie Kishitani (1)
  Kunihiko Sasaki (2)
  Minoru Nishimura (3)
  Kuniaki Nagano (2)
  Takeshi Nishio (1)
  
  1. Graduate School of Agricultural Science, Tohoku University, 1-1 Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai, 981-8555, Japan
  4. Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba, 292-0818, Japan
  2. Miyagi Prefectural Furukawa Agricultural Experimental Station, 88 Osaki Fukoku, Osaki, Miyagi, 989-6227, Japan
  3. Institute of Radiation Breeding, NIAS, Hitachi-Ohmiya, 319-2293, Japan
  
• ISSN：1572-9788

文摘

An unusually high temperature during the grain-filling period, such as that caused by global warming, impairs the quality of rice (Oryza sativa L.) grains. This sensitivity to high-temperature stress is different among cultivars, suggesting the possibility of developing a high-temperature-tolerant cultivar. Since marker-assisted selection would reduce time and labor in breeding for such a quantitative trait, we determined the chromosomal region responsible for high-temperature tolerance during the grain-filling period. A high-temperature-sensitive japonica cultivar Tohoku 168 and a tolerant japonica cultivar Kokoromachi were selected as the parental lines of recombinant inbred lines (RILs) by high-temperature stress treatment from 5 to 10?days after anthesis, which was found to be the period most critical for grain quality. Using the RILs, whose genotypes were determined by analysis with 131 DNA markers which were selected as polymorphic markers between these two cultivars from 2,648 DNA markers tested, the quantitative trait locus (QTL) for the percentage of white-back grains was mapped on chromosome 6. The Kokoromachi allele of the QTL, which had a positive additive effect on the high-temperature tolerance, was introduced into the Tohoku 168 genome by repeated backcrossings with marker-assisted selection. Using high-temperature stress treatment of the near isogenic lines developed, the QTL on chromosome 6 was localized within a 1.9-Mb region between two DNA markers, ktIndel001 and RFT1. These DNA markers would be useful not only for breeding high-temperature-tolerant cultivars but also for map-based cloning of the QTL.