Vmp1 and stamp genes variability of 'Candidatus phytoplasma solani' in Bosnian and Herzegovinian grapevine
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- 作者：Duška Delić ; Bachir Balech ; Mariana Radulović…
- 关键词：Bois noir disease ; Genetic variability ; Membrane protein ; Nested PCR ; RFLP ; Sequencing ; Phylogeny
- 刊名：European Journal of Plant Pathology
- 出版年：2016
- 出版时间：May 2016
- 年：2016
- 卷：145
- 期：1
- 页码：221-225
- 全文大小：284 KB
- 参考文献：Aryan, A., Brader, G., Mörtel, J., Pastar, M., & Riedle-Bauer, M. (2014). An abundant ‘Candidatus Phytoplasma solani’ tuf b strain is associated with grapevine, stinging nettle and Hyalesthes obsoletus. European Journal of Plant Pathology, 140, 213–227.CrossRef PubMed PubMedCentral
Atanasova, B., Jakovljević, M., Spasov, D., Jović, J., Mitrović, M., Toševski, I., & Cvrković, T. (2015). The molecular epidemiology of bois noir grapevine yellows caused by ‘Candidatus Phytoplasma solani’ in the Republic of Macedonia. European Journal of Plant Pathology. doi:10.1007/s10658-015-0649-0 .
Balech, B., Vicario, S., Donvito, G., Monaco, A., Notarangelo, P., & Pesole, G. (2015). MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information. Bioinformatics, 31(15), 2571–2573.CrossRef PubMed
Cimerman, A., Pacifico, D., Salar, P., Marzachi, C., & Foissac, X. (2009). Striking diversity of vmp1, a variable gene encoding a putative membrane protein of the stolbur phytoplasma. Applied and Environmental Microbiology, 75, 2951–2957.CrossRef PubMed PubMedCentral
Cvrković, T., Jović, J., Mitrović, M., Krstić, O., & Toševski, I. (2014). Experimental and molecular evidence of Reptalus panzeri as a natural vector of bois noir. Plant Pathology, 63, 42–53.CrossRef
Delić, D., Seljak, G., Martini, M., Ermacora, P., Carraro, L., Myrta, A., & Đurić, G. (2007). Surveys for grapevine yellows phytoplasmas in Bosnia and Herzegovina. Bulletin of Insectology, 60, 369–370.
Delić, D., Contaldo, N., Paltrinieri, S., Lolić, B., Ðurić, Z., Hrnčić, S., & Bertaccini, A. (2011a). Grapevine yellows in Bosnia and Herzegovina: surveys to identify phytoplasmas in grapevine, weeds and insect vectors. Bulletin of Insectology, 64, 245–246.
Delić, D., Lolić, B., & Karačić, A. (2011b). Screening for phytoplasma presence in West Herzegovina vineyards. Phytopathogenic Mollicutes, 1, 87–90.CrossRef
Delić, D., Đurić, Z., Jović, J., Lolić, B., Toševski, I., & Karačić, A. (2013). “Bois noir” phytoplasma and Auchenorryncha species in Bosnia and Herzegovina vineyards. In E. Torres, A. Lavina, & A. Batlle (Eds.), Third European Bois Noir Workshop (pp. 19–21). Barcelona.
Ewing, B., & Green, P. (1998). Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Research, 8, 186–194.CrossRef PubMed
Ewing, B., Hillier, L., Wendl, M. C., & Green, P. (1998). Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Research, 8(3), 175–185.CrossRef PubMed
Fabre, A., Danet, J. L., & Foissac, X. (2011). The stolbur phytoplasma antigenic membrane protein gene stamp is submitted to diversifying positive selection. Gene, 472, 37–41.CrossRef PubMed
Fialová, R., Válová, P., Balakishiyeva, G., Danet, J.-L., Săfářová, D., Foissac, X., & Navrátil, M. (2009). Genetic variability of stolbur phytoplasma in annual crop and wild plant species in South Moravia (Czech Republic). Journal of Plant Pathology, 91, 411–416.
Johannesen, J., Foissac, X., Kehrli, P., & Maixner, M. (2012). Impact of vector dispersal and host-plant fidelity on the dissemination of an emerging plant pathogen. PLoS ONE 7, e51809.
Kosovac, A., Radonjić, S., Hrnčić, S., Krstić, O., Toševski, I., & Jović, J. (2015). Molecular tracing of the transmission routes of bois noir in Mediterranean vineyards of Montenegro and experimental evidence for the epidemiological role of Vitex agnus-castus (Lamiaceae) and associated Hyalesthes obsoletus (Cixiidae). Plant Pathology. doi:10.1111/ppa.12409 .
Kostadinovska, E., Quaglino, F., Mitrev, S., Casati, P., Bulgari, D., & Bianco, P. A. (2014). Multiple gene analyses identify distinct Bois noir phytoplasma genotypes in the Republic of Macedonia. Phytopathologia Mediterranea, 53, 300–310.
Kovačević, Z., Petrović, D., Herceg, N., Vego, D., & Arar, K. (2010). Adventive weed flora in vineyards of Bosnia andHerzegovina. IX. Alps-Adria Scientific Workshop. doi: 10.1556/Novenyterm.59.2010.Suppl.1 .
Landi, L., Riolo, P., Murolo, S., Romanazzi, G., Nardi, S., & Isidoro, N. (2015). Genetic variability of stolbur phytoplasma in Hyalesthes obsoletus (Hemiptera: Cixiidae) and its main host plants in vineyard agroecosystems. Journal of Economic Entomology. doi:10.1093/jee/tov103 .
Langer, M., & Maixner, M. (2004). Molecular characterisation of grapevine yellows associated phytoplasmas of the stolbur-group based on RFLP-analysis of non-ribosomal DNA. Vitis, 43, 191–199.
Murolo, S., & Romanazzi. (2015). In-vineyard population structure of ‘Candidatus Phytoplasma solani’ using multilocus sequence typing analysis. Infection, Genetics and Evolution. doi:10.1016/j.meegid.2015.01.028 .PubMed
Plavec, J., Križanac, I., Budinščak, Ž., Škorić, D., & Šeruga Musić, M. (2015). A case study of FD and BN phytoplasma variability in Croatia: multigen sequence analyses approach. European Journal of Plant Pathology. doi:10.1007/s10658-015-0637-4 .
Quaglino, F., Zhao, Y., Casati, P., Bulgari, D., Bianco, P. A., Wei, W., & Davis, R. E. (2013). ‘Candidatus Phytoplasma solani’, a novel taxon associated with stolbur and bois noir related diseases of plants. International Journal of Systematic and Evolutionary Microbiology, 63, 2879–2894.CrossRef PubMed
Ronquist, F., Teslenko, M., Van der Mark, P., Ayres, D. L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., & Huelsenbeck, J. P. (2012). MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539–542.CrossRef PubMed PubMedCentral - 作者单位：Duška Delić (1)
Bachir Balech (2)
Mariana Radulović (1)
Biljana Lolić (1)
Ana Karačić (3)
Vera Vukosavljević (4)
Gordana Đurić (1)
Tatjana Jovanović Cvetković (1)
1. Faculty of Agriculture, University of Banjaluka, Bulevar vojvode Petra Bojovića 1A, Banjaluka, Bosnia and Herzegovina
2. Institute of Biomembranes and Bioenergetics (CNR), Via Amendola 165/A, Bari, Italy
3. Federal Agromediterranean Institute of Mostar, Biskupa Čule 10, Mostar, Bosnia and Herzegovina
4. Faculty of Agronomy, Department of Fruit Growing & Viticulture, Cara Dušana 34, Čačak, Serbia - 刊物类别：Biomedical and Life Sciences
- 刊物主题：Life Sciences
Plant Pathology
Plant Sciences
Ecology - 出版者：Springer Netherlands
- ISSN：1573-8469
文摘
Bois noir is one of the most important diseases caused by ‘Candidatus Phytoplasma solani’ affecting grapevine in the Euro-Mediterranean area. ‘Ca. P. solani’ characterization plays a significant role in its diagnosis, control and understanding of its epidemiology. In the present study, two genes encoding membrane proteins, namely vmp1 and stamp, were used to assess the genetic variability of 18 ‘Ca. P. solani’ grapevine isolates from the Herzegovina region (B&H), previously characterised as tuf-b type. Nested-PCR/RFLP and sequence analyses of vmp1 gene showed the presence of three profiles V17, V14 and V4 where V17 was highly prevalent. Phylogenetic analysis of stamp gene revealed the presence of four different genotypes, where Rqg50 was the most frequent. Finally, the combined results of tuf, vmp1 and stamp genes, reported three previously identified genotypes from Serbia, Austria and Montenegro, and two newly described ones (DB1 and DB2). Although performed only on ‘Ca. P. solani’ isolates from infected grapevines, this study provides useful molecular information to get better insight on BN epidemiology in B&H.