Improvement in the thermostability of a type A feruloyl esterase, AuFaeA, from Aspergillus usamii by iterative saturation mutagenesis
详细信息    查看全文
  • 作者:Xin Yin ; Jian-Fang Li ; Chun-Juan Wang ; Die Hu…
  • 关键词:Feruloyl esterase ; Aspergillus usamii ; Thermostability ; Iterative saturation mutagenesis
  • 刊名:Applied Microbiology and Biotechnology
  • 出版年:2015
  • 出版时间:December 2015
  • 年:2015
  • 卷:99
  • 期:23
  • 页码:10047-10056
  • 全文大小:1,785 KB
  • 参考文献:Abokitse K, Wu M, Bergeron H, Grosse S, Lau PCK (2010) Thermostable feruloyl esterase for the bioproduction of ferulic acid from triticale bran. Appl Microbiol Biotechnol 87:195–203CrossRef PubMed
    Badieyan S, Bevan DR, Zhang C (2012) Study and design of stability in GH5 cellulases. Biotechnol Bioeng 109:31–44CrossRef PubMed
    Bai W, Zhou C, Xue Y, Huang CH, Guo RT, Ma Y (2014) Three-dimensional structure of an alkaline xylanase Xyn11A-LC from alkalophilic Bacillus sp. SN5 and improvement of its thermal performance by introducing arginines substitutions. Biotechnol Lett 36:1495–1501CrossRef PubMed
    Balasco N, Esposito L, Simone AD, Vitagliano L (2013) Role of loops connecting secondary structure elements in the stabilization of proteins isolated from thermophilic organisms. Protein Sci 22:1016–1023PubMedCentral CrossRef PubMed
    Chen CC, Luo HL, Han X, Lv P, Ko TP, Peng W, Huang CH, Wang K, Gao J, Zheng Y, Yang Y, Zhang J, Yao B, Guo RT (2014) Structural perspectives of an engineered β-1,4-xylanase with enhanced thermostability. J Biotechnol 189:175–182CrossRef PubMed
    Crepin VF, Faulds CB, Connerton IF (2004) Functional classification of the microbial esterases. Appl Microbiol Biotechnol 63:647–652CrossRef PubMed
    Dehouck Y, Kwasigroch JM, Gilis D, Rooman M (2011) PoPMuSiC 2.1: a web server for the estimation of protein stability changes upon mutation and sequence optimality. BMC Bioinformatics 12:151PubMedCentral CrossRef PubMed
    Faulds CB (2010) What can feruloyl esterases do for us? Phytochem Rev. 9:121–132CrossRef
    Fei B, Xu H, Cao Y, Ma S, Guo H, Song T, Qiao D, Cao Y (2013) A multi-factors rational design strategy for enhancing the thermostability of Escherichia coli AppA phytase. J Ind Microbiol Biotechnol 40:457–464CrossRef PubMed
    Fernández L, Jiao N, Soni P, Gumulya Y, de Oliveira LG, Reetz MT (2010) An efficient method for mutant library creation in Pichia pastoris useful in directed evolution. Biocatal Biotransfor 28:122–129CrossRef
    Gong YY, Yin X, Zhang HM, Wu MC, Tang CD, Wang JQ, Pang QF (2013) Cloning, expression of a feruloyl esterase from Aspergillus usamii E001 and its applicability in generating ferulic acid from wheat bran. J Ind Microbiol Biotechnol 40:1433–1441CrossRef PubMed
    Hegde S, Srinivas P, Muralikrishna G (2009) Singe-step synthesis of 4-nitrophenyl ferulate for spectrophotometric assay of feruloyl esterases. Anal Biochem 387:128–129CrossRef PubMed
    Hermoso JA, Sanz-Aparicio J, Molina R, Juge N, González R, Faulds CB (2004) The crystal structure of feruloyl esterase A from Aspergillus niger suggests evolutive functional convergence in feruloyl esterase family. J Mol Biol 338:495–506CrossRef PubMed
    Jain PC, Varadarajan R (2014) A rapid, efficient, and economical inverse polymerase chain reaction-based method for generating a site saturation mutant library. Anal Biochem 449:90–98CrossRef PubMed
    Jun C, Joo JC, Lee JH, Kim YH (2014) Thermostabilization of glutamate decarboxylase B from Escherichia coli by structure-guided design of its pH-responsive N-terminal interdomain. J Biotechnol 174:22–28CrossRef PubMed
    Kim T, Joo JC, Yoo YJ (2012) Hydrophobic interaction network analysis for thermostabilization of a mesophilic xylanase. J Biotechnol 161:49–59CrossRef PubMed
    Kumar S, Tsai CJ, Nussinov R (2000) Factors enhancing protein thermostability. Protein Eng 13:179–191CrossRef PubMed
    Li Y, Cirino PC (2014) Recent advances in engineering proteins for biocatalysis. Biotechnol Bioeng 111:1273–1287CrossRef PubMed
    Mastihuba V, Kremnický L, Mastihubová M, Willett JL, Côté GL (2002) A spectrophotometric assay for feruloyl esterases. Anal Biochem 309:96–101CrossRef PubMed
    Pack SP, Yoo YJ (2004) Protein thermostability: structure-based difference of amino acid between thermophilic and mesophilic proteins. J Biotechnol 111:269–277CrossRef PubMed
    Rakotoarivonina H, Hermant B, Chabbert B, Touzel JP, Remond C (2011) A thermostable feruloyl-esterase from the hemicellulolytic bacterium Thermobacillus xylanilyticus releases phenolic acids from non-pretreated plant cell walls. Appl Microbiol Biotechnol 90:541–552CrossRef PubMed
    Reetz MT, Carballeira JD, Vogel A (2006) Iterative saturation mutagenesis on the basis of B factors as a strategy for increasing protein thermostability. Angew Chem Int Edit 45:7745–7751CrossRef
    Reetz MT, Soni P, Fernández L, Gumulya Y, Carballeira JD (2010) Increasing the stability of an enzyme toward hostile organic solvents by directed evolution based on iterative saturation mutagenesis using the B-FIT method. Chem Commun 46:8657–8658CrossRef
    Sanchis J, Fernández L, Carballeira JD, Drone J, Gumulya Y, Höbenreich H, Kahakeaw D, Kille S, Lohmer R, Peyralans JJ, Podtetenieff J, Prasad S, Soni P, Taglieber A, Wu S, Zilly FE, Reetz MT (2008) Improved PCR method for the creation of saturation mutagenesis libraries in directed evolution: application to difficult-to-amplify templates. Appl Microbiol Biotechnol 81:387–397CrossRef PubMed
    Saunders HM, Gilis D, Rooman M, Dehouck Y, Robertson AL, Bottomley SP (2011) Flanking domain stability modulates the aggregation kinetics of a polyglutamine disease protein. Protein Sci 20:1675–1681PubMedCentral CrossRef PubMed
    Shallom D, Shoham Y (2003) Microbial hemicellulases. Curr Opin Microbiol 6:219–228CrossRef PubMed
    Silva IR, Larsen DM, Jers C, Derkx P, Meyer AS, Mikkelsen JD (2013) Enhancing RGI lyase thermostability by targeted single point mutations. Appl Microbiol Biotechnol 97:9727–9735CrossRef PubMed
    Stephens DE, Khan FI, Singh P, Bisetty K, Singh S, Permaul K (2014) Creation of thermostable and alkaline stable xylanase variants by DNA shuffling. J Biotechnol 187:139–146CrossRef PubMed
    Taniguchi N, Nakayama S, Kawakami T, Murakami H (2013) Patch cloning method for multiple site-directed and saturation mutagenesis. BMC Biotechnol 13:91PubMedCentral CrossRef PubMed
    Taylor TJ, Vaisman II (2010) Discrimination of thermophilic and mesophilic proteins. BMC Struct Biol 10(Suppl 1):S5PubMedCentral CrossRef PubMed
    Tian J, Wang P, Gao S, Chu X, Wu N, Fan Y (2010) Enhanced thermostability of methyl parathion hydrolase from Ochrobactrum sp. M231 by rational engineering of a glycine to proline mutation. FEBS J 277:4901–4908CrossRef PubMed
    Tian J, Wang P, Huang L, Chu X, Wu N, Fan Y (2013) Improving the thermostability of methyl parathion hydrolase from Ochrobactrum sp. M231 using a computationally aided method. Appl Microbiol Biotechnol 97:2997–3006CrossRef PubMed
    Turner P, Mamo G, Karlsson EN (2007) Potential and utilization of thermophiles and thermostable enzymes in biorefining. Microb Cell Fact 6:9–31PubMedCentral CrossRef PubMed
    Wang K, Luo H, Tian J, Turunen O, Huang H, Shi P, Hua H, Wang C, Wang S, Yao B (2014) Thermostability improvement of a Streptomyces xylanase by introducing proline and glutamic acid residues. Appl Microbiol Biotechnol 80:2158–2165
    Yin X, Li JF, Wang JQ, Tang CD, Wu MC (2013) Enhanced thermostability of a mesophilic xylanase by N-terminal replacement designed by molecular dynamics simulation. J Sci Food Agric 93:3016–3023CrossRef PubMed
    Yu H, Huang H (2014) Engineering proteins for thermostability through rigidifying flexible sites. Biotechnol Adv 32:308–315CrossRef PubMed
    Zhang HM, Li JF, Wang JQ, Yang YJ, Wu MC (2014) Determinants for the improved thermostability of a mesophilic family 11 xylanase predicted by computational methods. Biotechnol Biofuels 7:3PubMedCentral CrossRef PubMed
    Zhang SB, Pei XQ, Wu ZL (2012) Multiple amino acid substitutions significantly improve the thermostability of feruloyl esterase A from Aspergillus niger. Bioresource Technol 117:140–147CrossRef
    Zhang SB, Wu ZL (2011) Identification of amino acid residues responsible for increased thermostability of feruloyl eaterase A from Aspergillus niger using the PoPMuSiC algorithm. Bioresource Technol 102:2093–2096CrossRef
    Zhang SB, Zhai HC, Wang L, Yu GH (2013) Expression, purification and characterization of a feruloyl esterase A from Aspergillus flavus. Protein Expres Purif 92:36–40CrossRef
    Zheng H, Liu Y, Sun M, Han Y, Wang J, Sun J, Lu F (2014) Improvement of alkali stability and thermostability of Paenibacillus campinasensis family-11 xylanase by directed evolution and site-directed mutagenesis. J Ind Microbiol Biotechnol 41:153–162CrossRef PubMed
    Zheng L, Baumann U, Reymond JL (2004) An efficient one-step site-directed and site-saturation mutagenesis protocol. Nucleic Acids Res 32:e115PubMedCentral CrossRef PubMed
  • 作者单位:Xin Yin (1)
    Jian-Fang Li (2)
    Chun-Juan Wang (2)
    Die Hu (1)
    Qin Wu (1)
    Ying Gu (3)
    Min-Chen Wu (3)

    1. Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122, China
    2. State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122, China
    3. Wuxi Medical School, Jiangnan University, 1800 Lihu Road, Wuxi, 214122, China
  • 刊物类别:Chemistry and Materials Science
  • 刊物主题:Chemistry
    Biotechnology
    Microbiology
    Microbial Genetics and Genomics
  • 出版者:Springer Berlin / Heidelberg
  • ISSN:1432-0614
文摘
Feruloyl or ferulic acid esterase (Fae, EC 3.1.1.73) catalyzes the hydrolysis of ester bonds between polysaccharides and phenolic acid compounds in xylan side chain. In this study, the thermostability of a type A feruloyl esterase (AuFaeA) from Aspergillus usamii was increased by iterative saturation mutagenesis (ISM). Two amino acids, Ser33 and Asn92, were selected for saturation mutagenesis according to the B-factors analyzed by B-FITTER software and ΔΔG values predicted by PoPMuSiC algorithm. After screening the saturation mutagenesis libraries constructed in Pichia pastoris, 15 promising variants were obtained. The best variant S33E/N92-4 (S33E/N92R) produced a T m value of 44.5 °C, the half-lives (t 1/2) of 35 and 198 min at 55 and 50 °C, respectively, corresponding to a 4.7 °C, 2.33- and 3.96-fold improvement compared to the wild type. Additionally, the best S33 variant S33-6 (S33E) was thermostable at 50 °C with a t 1/2 of 82 min, which was 32 min longer than that of the wild type. All the screened S33E/N92 variants were more thermostable than the best S33 variant S33-6 (S33E). This work would contribute to the further studies on higher thermostability modification of type A feruloyl esterases, especially those from fungi. The thermostable feruloyl esterase variants were expected to be potential candidates for industrial application in prompting the enzymic degradation of plant biomass materials at elevated temperatures.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700