RIKEN Cassava Initiative: Establishment of a Cassava Functional Genomics Platform
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- 作者：Yoshinori Utsumi (1)
Tetsuya Sakurai (2)
Yoshimi Umemura (3)
Sarah Ayling (3)
Manabu Ishitani (3)
Jarunya Narangajavana (4)
Punchapat Sojikul (4)
Kanokporn Triwitayakorn (5)
Minami Matsui (6)
Ri-ichiroh Manabe (7)
Kazuo Shinozaki (8)
Motoaki Seki (1) (6) - 关键词：Cassava ; Functional genomics ; Full ; length cDNAs ; DNA microarray ; Database
- 刊名：Tropical Plant Biology
- 出版年：2012
- 出版时间：March 2012
- 年：2012
- 卷：5
- 期：1
- 页码：110-116
- 全文大小：173KB
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Tetsuya Sakurai (2)
Yoshimi Umemura (3)
Sarah Ayling (3)
Manabu Ishitani (3)
Jarunya Narangajavana (4)
Punchapat Sojikul (4)
Kanokporn Triwitayakorn (5)
Minami Matsui (6)
Ri-ichiroh Manabe (7)
Kazuo Shinozaki (8)
Motoaki Seki (1) (6)
1. Plant Genomic Network Research Team, RIKEN Plant Science Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
2. Integrated Genome Informatics Research Unit, RIKEN Plant Science Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
3. Agrobiodiversity and Biotechnology Project, International Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia
4. Department of Biotechnology, Faculty of Science, Mahidol University, Bangkok, 10400, Thailand
5. Institute of Molecular Biosciences, Mahidol University, Salaya, Nakhon Pathom, 73170, Thailand
6. Synthetic Genomics Research Team, RIKEN Biomass Engineering Program (BMEP), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
7. LSA System Development Group, RIKEN Omics Science Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
8. Gene Discovery Research Group, RIKEN Plant Science Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
文摘
Cassava (Manihot esculenta Crantz) is an important tropical root crop that provides food security and income generation for many farmers. Cassava ranks as the third most important source of calories in the tropics and provides sustenance to 800 million people worldwide. Cassava is also an efficient source of modified starch and bioethanol. In spite of the many advantages and high potential of cassava, the research community lacks functional genomic resources. Therefore, RIKEN has been working to establish a cassava functional genomics platform, which includes full-length cDNAs, DNA microarrays, transformation capabilities, and a searchable database in collaboration with the International Center for Tropical Agriculture (CIAT) of Colombia and Mahidol University of Thailand. In this review, we summarize the present status and future perspectives of our cassava functional genomic approaches.