A novel satellite DNA isolated in Pecten jacobaeus shows high sequence similarity among molluscs
详细信息    查看全文
  • 作者:Agnese Petraccioli ; Gaetano Odierna ; Teresa Capriglione…
  • 关键词:Satellite DNA ; Pecten jacobaeus ; Pectinidae ; Mollusca
  • 刊名:Molecular Genetics and Genomics
  • 出版年:2015
  • 出版时间:October 2015
  • 年:2015
  • 卷:290
  • 期:5
  • 页码:1717-1725
  • 全文大小:928 KB
  • 参考文献:Abad JP, Carmena M, Baars S, Saunders RD, Glover DM, Lude?a P, Sentis C, Tyler-Smith C, Villasante A (1992) Dodeca satellite: a conserved G+C-rich satellite from the centromeric heterochromatin of Drosophila melanogaster. Proc Natl Acad Sci USA 89:4663-667PubMed Central CrossRef PubMed
    Altschul SF, Madden TL, Sch?ffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-402PubMed Central CrossRef PubMed
    Amor N, Odierna G, Chinali G, Said K, Picariello O (2009) Unusual chromosomal distribution of a major satellite DNA from Discoglossus pictus (Amphibia, Anura). Cytogenet Genome Res 127:33-2CrossRef PubMed
    Bao W, Jurka J (2013) DNA transposons from the Pacific oyster genome. Repbase Reports 13:464-64
    Barucca M, Olmo E, Schiaparelli S, Canapa A (2004) Molecular phylogeny of the family Pectinidae (Mollusca: Bivalvia) based on mitochondrial 16S and 12S rRNA genes. Mol Phylogenet Evol 31:89-5CrossRef PubMed
    Bejerano G, Lowe CB, Ahituv N, King B, Siepel A, Salama SR, Rubin EM, Kent WJ, Haussler D (2006) A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature 441:87-0CrossRef PubMed
    Biscotti MA, Canapa A, Olmo E, Barucca M, Teo CH, Schwarzacher T, Dennerlein S, Richter R, Heslop-Harrison JS (2007) Repetitive DNA, molecular cytogenetics and genome organization in the King scallop (Pecten maximus). Gene 406:91-8CrossRef PubMed
    Biscotti MA, Barucca M, Capriglione T, Odierna G, Olmo E, Canapa A (2008) Molecular and cytogenetic characterization of repetitive DNA in the Antarctic polyplacophoran Nuttallochiton mirandus. Chromosome Res 16:907-16CrossRef PubMed
    Bradley RD, Wichman HA (1994) Rapidly evolving repetitive DNAs in a conservative genome: a test of factors that affect chromosomal evolution. Chromosome Res 2:354-60CrossRef PubMed
    Brand AR (2006) Scallop ecology: distributions and behaviour. In: Shumway SE, Parsons GJ (eds) Scallops: biology, ecology and aquaculture. Elsevier BV Publishers, Amsterdam, The Netherlands, pp 651-44CrossRef
    Canapa A, Barucca M, Cerioni PN, Olmo E (2000a) A satellite DNA containing CENP-B box-like motifs is present in the Antarctic scallop Adamussium colbecki. Gene 247:175-80CrossRef PubMed
    Canapa A, Barucca M, Marinelli A, Olmo E (2000b) Molecular data from the 16S rRNA gene for the phylogeny of Pectinidae (Mollusca: Bivalvia). J Mol Evol 50:93-7PubMed
    Charlesworth B, Sniegowski P, Stephan W (1994) The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371:215-20CrossRef PubMed
    Cremer T, Cremer M, Dietzel S, Muller S, Solovei S, Fakan S (2006) Chromosome territories—a functional nuclear landscape. Curr Opin Cell Biol 18:307-16CrossRef PubMed
    Csink AK, Henikoff S (1998) Something from nothing: the evolution and utility of satellite repeats. Trends Genet 14:200-04CrossRef PubMed
    de La Herrán R, Fontana F, Lanfredi M, Congiu L, Leis M, Rossi R, Ruiz Rejón C, Ruiz Rejón M, Garrido-Ramos MA (2001) Slow rates of evolution and sequence homogenization in an ancient satellite DNA family of sturgeons. Mol Biol Evol 18:432-36CrossRef
    Dover GA (1982) Molecular drive: a cohesive mode of species evolution. Nature 299:111-17CrossRef PubMed
    Dover GA (1986) Molecular drive in multigene families: how biological novelties arise, spread and are assimilated. Trends Genet 2:159-65CrossRef
    Dover GA (2002) Molecular drive. Trends Genet 18:587-89CrossRef PubMed
    Gaffney PM, Pierce JC, Mackinley AG, Titchen DA, Glenn WK (2003) Pearl, a novel family of putative transposable elements in bivalve mollusks. J Mol Evol 56:308-16CrossRef PubMed
    Garagna S, Broccoli D, Redi CA, Searle JB, Cooke HJ, Capanna E (1995) Robertsonianmetacentrics of the house mouse lose telomeric sequences but retain some minor satellite DNA in the pericentromeric area. Chromosoma 103:685-92CrossRef PubMed
    Henikoff S, Dalal Y (2005) Centromeric chromatin: what makes it unique? Curr Opin Genet Dev 15:177-84CrossRef PubMed
    Heslop-Harrison JS, Schwarzacher T (2011) Organisation of the plant genome in chromosomes. Plant J 66:18-3CrossRef PubMed
    Heslop-Harrison JS, Brandes A, Schwarzacher T (2003) Tandemly repeated DNA sequences and centromeric chromosomal regions of Arabidopsis species. Chromosome Res 11:241-53CrossRef PubMed
    Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP (2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294:2310-314CrossRef PubMed
    Kohany O, Gentles AJ, Hankus L, Jurka J (2006) Annotation, submission and screening of repetitive elements in repbase: repbase submitter and censor. BMC Bioinform 7:474CrossRef
    Kojima KK, Jurka J (2014) DNA transposons from Capitella teleta (a polychaete worm). Repbase Rep 14:1893
    Lanfredi M, Congiu L, Garrido-Ramos MA, de la Herrán R, Leis M, Chicca M, Rossi R, Tagliavini J, Ruiz Rejón C, R
  • 作者单位:Agnese Petraccioli (1)
    Gaetano Odierna (1)
    Teresa Capriglione (1)
    Marco Barucca (2)
    Mariko Forconi (2)
    Ettore Olmo (2)
    Maria Assunta Biscotti (2)

    1. Dipartimento di Biologia, Università di Napoli Federico II, Naples, Italy
    2. Dipartimento di Scienze della Vita e dell’Ambiente, Università Politecnica delle Marche, via Brecce Bianche, 60131, Ancona, Italy
  • 刊物类别:Biomedical and Life Sciences
  • 刊物主题:Life Sciences
    Cell Biology
    Biochemistry
    Microbial Genetics and Genomics
  • 出版者:Springer Berlin / Heidelberg
  • ISSN:1617-4623
文摘
The aim of this work is to investigate the sequence conservation and the evolution of repeated DNA in related species. Satellite DNA is a component of eukaryotic genomes and is made up of tandemly repeated sequences. These sequences are affected by high rates of mutation that lead to the occurrence of species-specific satellite DNAs, which are different in terms of both quantity and quality. In this work, a novel repetitive DNA family, named PjHhaI sat, is described in Pecten jacobaeus. The quantitative analyses revealed a different abundance of this element in the molluscan species investigated in agreement with the “library hypothesis-even if, in this case, at a high taxonomic level. In addition, the qualitative analysis demonstrated an astonishing sequence conservation not only among scallops but also in six other molluscan species belonging to three classes. These findings suggest that the PjHhaI sat may be considered as the most ancients of DNA described so far, which remained “frozen-during molluscan evolution. The widespread distribution of this sat DNA in molluscs as well as its long evolutionary preservation open up questions on the functional role of this element. A future challenge might be the identification of proteins or molecules which interact with the PjHhaI sat. Keywords Satellite DNA Pecten jacobaeus Pectinidae Mollusca

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700