Profiles of teleost DNA fragmentation factor alpha and beta from rock bream (Oplegnathus fasciatus): molecular characterization and genomic structure and gene expression in immune stress
详细信息    查看全文
  • 作者:Sukkyoung Lee ; Ilson Whang ; Qiang Wan ; Chulhong Oh ; Youngdeuk Lee…
  • 关键词:DNA fragmentation factor ; Apoptosis ; Rock bream ; mRNA expression ; Immune challenge
  • 刊名:Genes & Genomics
  • 出版年:2016
  • 出版时间:February 2016
  • 年:2016
  • 卷:38
  • 期:2
  • 页码:193-204
  • 全文大小:2,177 KB
  • 参考文献:Barber GN (2001) Host defense, viruses and apoptosis. Cell Death Differ 8:113–126CrossRef PubMed
    Bayascas JR, Yuste VJ, Sole C, Sanchez-Lopez I, Segura MF, Perera R, Comella JX (2004) Characterization of splice variants of human caspase-activated DNase with CIDE-N structure and function. FEBS Lett 566:234–240CrossRef PubMed
    Benedict CA, Norris PS, Ware CF (2002) To kill or be killed: viral evasion of apoptosis. Nat Immunol 3:1013–1018CrossRef PubMed
    Bols NC, Brubacher JL, Ganassin RC, Lee LEJ (2001) Ecotoxicology and innate immunity in fish. Dev Comp Immunol 25:853–873CrossRef PubMed
    Boya P, Pauleau AL, Poncet D, Gonzalez-Polo RA, Zamzami N, Kroemer G (2004) Viral proteins targeting mitochondria: controlling cell death. Biochim Biophys Acta 1659:178–189CrossRef PubMed
    Bustin SA et al (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55:611–622CrossRef PubMed
    Chen D, Stetler RA, Cao G, Pei W, O’Horo C, Yin XM, Chen J (2000) Characterization of the rat DNA fragmentation factor 35/Inhibitor of caspase-activated DNase (Short form). The endogenous inhibitor of caspase-dependent DNA fragmentation in neuronal apoptosis. J Biol Chem 275:38508–38517CrossRef PubMed
    Danial NN, Korsmeyer SJ (2004) Cell death: critical control points. Cell 116:205–219CrossRef PubMed
    Elmore S (2007) Apoptosis: a review of programmed cell death. Toxicol Pathol 35:495–516PubMedCentral CrossRef PubMed
    Elvitigala DA et al (2012) Caspase 3 from rock bream (Oplegnathus fasciatus): genomic characterization and transcriptional profiling upon bacterial and viral inductions. Fish Shellfish Immunol 33:99–110CrossRef PubMed
    Elvitigala DA, Premachandra HK, Whang I, Yeo SY, Choi CY, Noh JK, Lee J (2015) Molecular cloning, expression and functional characterization of a teleostan cytokine-induced apoptosis inhibitor from rock bream (Oplegnathus fasciatus). Dev Comp Immunol 52:48–57CrossRef PubMed
    Enari M, Sakahira H, Yokoyama H, Okawa K, Iwamatsu A, Nagata S (1998) A caspase-activated DNase that degrades DNA during apoptosis, and its inhibitor ICAD. Nature 391:43–50CrossRef PubMed
    Engidawork E, Gulesserian T, Yoo BC, Cairns N, Lubec G (2001) Alteration of caspases and apoptosis-related proteins in brains of patients with Alzheimer’s disease. Biochem Biophys Res Commun 281:84–93CrossRef PubMed
    Fukushima K, Kikuchi J, Koshiba S, Kigawa T, Kuroda Y, Yokoyama S (2002) Solution Structure of the DFF-C Domain of DFF45/ICAD. A structural basis for the regulation of apoptotic DNA fragmentation. J Mol Biol 321:317–327CrossRef PubMed
    Glowacka E, Banasik M, Lewkowicz P, Tchorzewski H (2002) The effect of LPS on neutrophils from patients with high risk of type 1 diabetes mellitus in relation to IL-8, IL-10 and IL-12 production and apoptosis in vitro. Scand J Immunol 55:210–217CrossRef PubMed
    Hanus J, Kalinowska-Herok M, Widlak P (2008) The major apoptotic endonuclease DFF40/CAD is a deoxyribose-specific and double-strand-specific enzyme. Apoptosis 13:377–382CrossRef PubMed
    Heumann D, Roger T (2002) Initial responses to endotoxins and Gram-negative bacteria. Clin Chim Acta 323:59–72CrossRef PubMed
    Honig LS, Rosenberg RN (2000) Apoptosis and neurologic disease. Am J Med 108:317–330CrossRef PubMed
    Jeong JM, Kim JW, Park HJ, Song JH, Kim DH, Park CI (2011) Molecular cloning and characterisation of the rock bream, Oplegnathus fasciatus, Fas (CD95/APO-1), and its expression analysis in response to bacterial or viral infection. Results Immunol 1:11–17PubMedCentral CrossRef PubMed
    Jung MH, Nikapitiya C, Song JY, Lee JH, Lee J, Oh MJ, Jung SJ (2014) Gene expression of pro- and anti-apoptotic proteins in rock bream (Oplegnathus fasciatus) infected with megalocytivirus (family Iridoviridae). Fish Shellfish Immunol 37:122–130CrossRef PubMed
    Kasthuri SR, Wan Q, Whang I, Lim BS, Yeo SY, Choi CY, Lee J (2014) Functional characterization of the evolutionarily preserved mitochondrial antiviral signaling protein (MAVS) from rock bream, Oplegnathus fasciatus. Fish Shellfish Immunol 40:399–406CrossRef PubMed
    Kawane K et al (1999) Structure and promoter analysis of murine CAD and ICAD genes. Cell Death Differ 6:745–752CrossRef PubMed
    Kutscher D, Pingoud A, Jeltsch A, Meiss G (2012) Identification of ICAD-derived peptides capable of inhibiting caspase-activated DNase. FEBS J 279:2917–2928CrossRef PubMed
    Lancellotti M, Pereira RF, Cury GG, Hollanda LM (2009) Pathogenic and opportunistic respiratory bacteria-induced apoptosis. Braz J Infect Dis 13:226–231CrossRef PubMed
    Lichtenfels AJ, Lorenzi-Filho G, Guimaraes ET, Macchione M, Saldiva PH (1996) Effects of water pollution on the gill apparatus of fish. J Comp Pathol 115:47–60CrossRef PubMed
    Liu X, Zou H, Slaughter C, Wang X (1997) DFF, a heterodimeric protein that functions downstream of caspase-3 to trigger DNA fragmentation during apoptosis. Cell 89:175–184CrossRef PubMed
    Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(−∆∆C(T)) Method. Methods 25:402–408CrossRef PubMed
    McCarty JS, Toh SY, Li P (1999a) Multiple domains of DFF45 bind synergistically to DFF40: roles of caspase cleavage and sequestration of activator domain of DFF40. Biochem Biophys Res Commun 264:181–185CrossRef PubMed
    McCarty JS, Toh SY, Li P (1999b) Study of DFF45 in its role of chaperone and inhibitor: two independent inhibitory domains of DFF40 nuclease activity. Biochem Biophys Res Commun 264:176–180CrossRef PubMed
    Mukae N, Enari M, Sakahira H, Fukuda Y, Inazawa J, Toh H, Nagata S (1998) Molecular cloning and characterization of human caspase-activated DNase. Proc Natl Acad Sci 95:9123–9128PubMedCentral CrossRef PubMed
    Munshi N, Fernandis AZ, Cherla RP, Park IW, Ganju RK (2002) Lipopolysaccharide-induced apoptosis of endothelial cells and its inhibition by vascular endothelial growth factor. J Immunol 168:5860–5866CrossRef PubMed
    Park HH (2015) Structural insight into CIDE domains: the Janus face of CIDEs. Apoptosis 20:240–249CrossRef PubMed
    Premachandra HK et al (2012) Cystatin B homolog from rock bream Oplegnathus fasciatus: genomic characterization, transcriptional profiling and protease-inhibitory activity of recombinant protein. Comp Biochem Physiol B 163:138–146CrossRef PubMed
    Sacco R et al (2003) Antiapoptotic regulation by hepatitis C virus core protein through up-regulation of inhibitor of caspase-activated DNase. Virology 317:24–35CrossRef PubMed
    Sakahira H, Enari M, Nagata S (1998) Cleavage of CAD inhibitor in CAD activation and DNA degradation during apoptosis. Nature 391:96–99CrossRef PubMed
    Sakahira H, Iwamatsu A, Nagata S (2000) Specific chaperone-like activity of inhibitor of caspase-activated DNase for caspase-activated DNase. J Biol Chem 275:8091–8096CrossRef PubMed
    Whang I et al (2011a) Molecular characterization and expression analysis of Cathepsin B and L cysteine proteases from rock bream (Oplegnathus fasciatus). Fish Shellfish Immunol 30:763–772CrossRef PubMed
    Whang I et al (2011b) Characterization and expression analysis of a goose-type lysozyme from the rock bream Oplegnathus fasciatus, and antimicrobial activity of its recombinant protein. Fish Shellfish Immunol 30:532–542CrossRef PubMed
    Widlak P, Garrard WT (2006) Unique features of the apoptotic endonuclease DFF40/CAD relative to micrococcal nuclease as a structural probe for chromatin. Biochem Cell Biol 84:405–410CrossRef PubMed
    Widlak P, Garrard WT (2009) Roles of the major apoptotic nuclease-DNA fragmentation factor-in biology and disease. Cell Mol Life Sci 66:263–274CrossRef PubMed
    Xaus J et al (2000) LPS induces apoptosis in macrophages mostly through the autocrine production of TNF-alpha. Blood 95:3823–3831PubMed
    Xiang Z, Qu F, Qi L, Ying T, Li J, Shu X, Yu Z (2014) Cloning and characterization of an apoptosis-related DNA fragmentation factor (DFF) from oyster Crassostrea hongkongensis. Fish Shellfish Immunol 38:119–126CrossRef PubMed
    Zhang JH, Xu M (2000) DNA fragmentation in apoptosis. Cell Res 10:205–211CrossRef PubMed
    Zhou P, Lugovskoy AA, McCarty JS, Li P, Wagner G (2001) Solution structure of DFF40 and DFF45N-terminal domain complex and mutual chaperone activity of DFF40 and DFF45. Proc Natl Acad Sci USA 98:6051–6055PubMedCentral CrossRef PubMed
  • 作者单位:Sukkyoung Lee (1) (2)
    Ilson Whang (2)
    Qiang Wan (1) (2)
    Chulhong Oh (3)
    Youngdeuk Lee (3)
    Yucheol Kim (1) (2)
    Hyowon Kim (1) (2)
    Jehee Lee (1) (2) (4)

    1. Department of Marine Life Sciences, School of Marine Biomedical Sciences, Jeju National University, Jeju-si, Jeju Self-Governing Province, 63243, Republic of Korea
    2. Fish Vaccine Research Center, Jeju National University, Jeju-si, Jeju Self-Governing Province, 63243, Republic of Korea
    3. Jeju International Marine Science Research & Education Center, Korea Institute of Ocean Science & Technology, Jeju-si, Jeju Self-Governing Province, 63349, Republic of Korea
    4. Marine Molecular Genetics Lab, Department of Marine Life Sciences, College of Ocean Science, Jeju National University, 102 Jejudaehak-ro, Jeju-si, Jeju Special Self-Governing Province, 63243, Republic of Korea
  • 刊物主题:Microbial Genetics and Genomics; Plant Genetics & Genomics; Animal Genetics and Genomics; Human Genetics;
  • 出版者:Springer Netherlands
  • ISSN:2092-9293
文摘
Apoptosis serves to protect normal cells during the processes of development, aging, tissue homeostasis, immunity, and inflammation. Molecules such as caspases, the Bcl-2 family proteins, cytochrome c, APAF-1, and apoptotic endonucleases are concerned with and regulate different stages of apoptosis. DNA fragmentation factor (DFF) is a key final molecule in chromosomal DNA fragmentation during the last step of apoptosis, and is a heterodimeric complex consisting of alpha/inhibitor of caspase-activated DNase (DFFA/ICAD) and beta/caspase-activated DNase (DFFB/CAD) subunits. DFFB/CAD is normally combined with the inhibitor, DFFA/ICAD, in healthy cells. However, after cleavage of the DFF complex by effector caspases, DFFB/CAD acts as an apoptotic nuclease and induces DNA fragmentation in apoptotic cells. The study of DFF proteins is focused on the roles of the apoptotic pathway in mammals. However, gene expression and functions under immune stimulation are not well known in other species. In the present study, we first characterized teleost DFFA/ICAD and DFFB/CAD from rock bream at the molecular level and analyzed the transcriptional expression pattern under immune challenges, to understand their role in immunity. These putative proteins have shown conserved domains and interaction sites orthologous to those of other species. High mRNA expression of both genes was found in the gills and blood of tissues involved in the immune response. The increased expression of DFF genes upon bacterial and viral stimulation was confirmed by qPCR analysis. DFFA/ICAD and DFFB/CAD of rock bream may play a pivotal role in apoptosis and may be involved in host immunity against bacterial and viral infection. Keywords DNA fragmentation factor Apoptosis Rock bream mRNA expression Immune challenge

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700